View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_26 (Length: 254)
Name: NF18690_low_26
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 5407995 - 5408155
Alignment:
| Q |
55 |
aaacacacacatagtatagctaaacagaacacttttttgcactttcnnnnnnnnnn-------cacttttttgcagatttttccattgcatttaagcaac |
147 |
Q |
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| T |
5407995 |
aaacacacacatagtatagctaaacagaacacttttttgcactttcaaaaaaaaaaaaaaaaacacttttttgcagatttttccattgcatttaagcaac |
5408094 |
T |
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| Q |
148 |
ttcacctagtcttgccaagttactcaaaagtcaaaacccctttaatttcccagctaccaat |
208 |
Q |
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| T |
5408095 |
ttcacctagtcttgccaagttactcaaaagtcaaaacccctttaatttcccagctaccaat |
5408155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 5407921 - 5407960
Alignment:
| Q |
18 |
acattcaattcactttttcaccaaaatcatttttacaaaa |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5407921 |
acattcaattcactttttcaccaaaatcatttttacaaaa |
5407960 |
T |
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