View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_29 (Length: 236)
Name: NF18690_low_29
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 21637402 - 21637622
Alignment:
| Q |
16 |
attataaaatacacaattcgattaaccacaaactattcctccaactttctaagttttataaattcaatcttgggaaaactgtgcaacaagacccacccac |
115 |
Q |
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| T |
21637402 |
attataaaatacacaattcaattaaccacaaactattcctccaaatttctaagttttataaattcaatcttgggaaaactgtgcaacaagacccacccac |
21637501 |
T |
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| Q |
116 |
tggaacaatgtaaaaaatgcttcaaatgaatggctctaatttcttctctgtgaaagattagatatttgtttccttattcacattattatataggaacaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21637502 |
tggaacaatgtaaaaaatgcttcaaatgaatggctctagtttcttctctgtgaaggattagatatttgtttccttattcacattattatataggaacaat |
21637601 |
T |
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| Q |
216 |
accagtttgctccgccatcac |
236 |
Q |
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||||||||||||||||||||| |
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| T |
21637602 |
accagtttgctccgccatcac |
21637622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 22195194 - 22195400
Alignment:
| Q |
16 |
attataaaatacacaattcgattaaccacaaactattcctccaactttctaagttttataaattcaatcttgggaaaactgtgcaacaagacccacccac |
115 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22195194 |
attataaaatacacaactcaattaaccacaaactattcctccaactttctaagttttataaattcaatcttgggaaaactgtgcaacaagacccatccat |
22195293 |
T |
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| Q |
116 |
tggaacaatgtaaaaaatgcttcaaatgaatggctctaatttcttctctgtgaaagattagatatttgtttccttattcacattattatataggaacaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22195294 |
tggaacaatgtaaaaaatgcttcaaatgaatggcactagtttcttctttgtgaaagattagatatttgtttccttattcacattattatataggaacaat |
22195393 |
T |
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| Q |
216 |
accagtt |
222 |
Q |
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||||||| |
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| T |
22195394 |
accagtt |
22195400 |
T |
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