View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_3 (Length: 712)
Name: NF18690_low_3
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 471 - 696
Target Start/End: Original strand, 37420328 - 37420553
Alignment:
| Q |
471 |
tcaagcttttctactcaaataagcttaaaaaactaatcattctggattttcgtgtttgaggaacgaacatgtcacttatggcaaaagtgagagaagaaag |
570 |
Q |
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| T |
37420328 |
tcaagcttttctactcaaataagcttaaaaaactaatcattctggattttcttgtttgaggaacgaacatgtcacttatggcaaaagtgagagaagaaag |
37420427 |
T |
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| Q |
571 |
aagttgcttggcggcaggaggaggaggctgaggaaagggaagaagctcaaagcgttcaataaaagcaccaaaatcaggtttaggagcgttgcggcagcgt |
670 |
Q |
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| T |
37420428 |
aagttgcttggcggcaggaggaggagactgaggaaagggaagaagctcaaagcgttcaataaaagcaccaaaatcaggtttaggagcgttgcggcagcgt |
37420527 |
T |
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| Q |
671 |
cttctacggcgagtctccgagagaac |
696 |
Q |
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| T |
37420528 |
cttctacggcgagtctccgagagaac |
37420553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 37419873 - 37420091
Alignment:
| Q |
17 |
aatatcagcaaactttctagacaaccccaagaaatataaaacataaaaagaattaacttttgactcaaaaattctaaaaatgaatcaacgcttacaagaa |
116 |
Q |
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| T |
37419873 |
aatatcagcaaactttctggacaaccccaagaaatataaaacataaaaagaattaacttttgactcaaaaattctaaaaatgaatcaacgcttacaagaa |
37419972 |
T |
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| Q |
117 |
ttaacaacaataattatgtctaaaaactaacacatctttcatggagaattaaatattgtaacatacaaatgcatcacaaattatcaacaaattttgcata |
216 |
Q |
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| T |
37419973 |
ttaacaacaacaattatgtctaaaaactaacacatctttcat-gagaattaaatattgtaacatacaaatgcatcacaaattatcaacaaattttgcata |
37420071 |
T |
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| Q |
217 |
cagccccaagaacataaaac |
236 |
Q |
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| T |
37420072 |
cagccccaagaacataaaac |
37420091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 307 - 358
Target Start/End: Original strand, 37420162 - 37420213
Alignment:
| Q |
307 |
gtaaatcaatgctgtatcacaaaatatcggcaaattttctatacaaccccgt |
358 |
Q |
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| T |
37420162 |
gtaaatcaatgctgtatcacaaaatatcggcaaattttctatacaaccccgt |
37420213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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