View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_30 (Length: 228)
Name: NF18690_low_30
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 52806327 - 52806548
Alignment:
| Q |
1 |
atccaaacatgtacttagtatattattgttattgattaagcaaaatatcacctggaagaatgaagggtcaagccaagtccacctgatgtactcatcaact |
100 |
Q |
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| T |
52806327 |
atccaaacatgtacttagtat--tattgttattgattaagcaaaatatcacctggaagaatgaagggtcaagccaagtccacctgatgtactcatcaact |
52806424 |
T |
|
| Q |
101 |
cggttctttttggtggagaaaagagaactgagttaaactcagaagaactgtgcttaacactagtagcagccatgaaattgttctgtctgaaactgctaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52806425 |
cggttctttttggtggagaaaagagaactgagttaaactcagaagaactgtgcttagcactagtagcagccatgaaattgttctgtctgaaactgctaag |
52806524 |
T |
|
| Q |
201 |
gttaatgttttccctatgcttctc |
224 |
Q |
| |
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|||||||||||| ||||| ||||| |
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| T |
52806525 |
gttaatgttttctctatgattctc |
52806548 |
T |
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