View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18690_low_32 (Length: 207)

Name: NF18690_low_32
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18690_low_32
NF18690_low_32
[»] chr2 (8 HSPs)
chr2 (21-189)||(38293393-38293559)
chr2 (77-143)||(32680694-32680760)
chr2 (55-143)||(3270340-3270428)
chr2 (83-145)||(34598897-34598959)
chr2 (55-143)||(21570520-21570608)
chr2 (55-143)||(30420558-30420646)
chr2 (77-143)||(40660043-40660107)
chr2 (55-143)||(45128085-45128173)
[»] chr3 (3 HSPs)
chr3 (55-143)||(25162311-25162398)
chr3 (56-130)||(22802897-22802970)
chr3 (88-143)||(32607375-32607430)
[»] chr7 (3 HSPs)
chr7 (55-143)||(20116460-20116548)
chr7 (55-143)||(42311157-42311245)
chr7 (55-143)||(46821891-46821979)
[»] chr4 (8 HSPs)
chr4 (55-143)||(10389865-10389953)
chr4 (55-143)||(43444282-43444370)
chr4 (55-145)||(37188702-37188792)
chr4 (77-143)||(51317897-51317963)
chr4 (55-139)||(21090042-21090126)
chr4 (107-143)||(4643798-4643834)
chr4 (56-142)||(47416774-47416860)
chr4 (55-143)||(43154133-43154220)
[»] chr1 (14 HSPs)
chr1 (55-143)||(28035020-28035108)
chr1 (77-143)||(14545423-14545489)
chr1 (37-143)||(20266165-20266271)
chr1 (77-143)||(35584733-35584799)
chr1 (78-143)||(40646592-40646657)
chr1 (55-143)||(25728071-25728159)
chr1 (55-142)||(27872620-27872707)
chr1 (55-145)||(30818455-30818545)
chr1 (77-142)||(38520646-38520711)
chr1 (55-143)||(7997668-7997756)
chr1 (55-143)||(18569422-18569510)
chr1 (56-143)||(25406396-25406483)
chr1 (60-143)||(41081815-41081899)
chr1 (55-142)||(45426175-45426262)
[»] chr8 (4 HSPs)
chr8 (37-143)||(35580324-35580430)
chr8 (77-143)||(14907036-14907102)
chr8 (79-143)||(2655777-2655841)
chr8 (55-143)||(9072601-9072689)
[»] chr5 (3 HSPs)
chr5 (77-143)||(26578151-26578217)
chr5 (55-143)||(30371604-30371692)
chr5 (56-143)||(10649334-10649421)
[»] chr6 (3 HSPs)
chr6 (55-143)||(23947429-23947517)
chr6 (78-143)||(7876157-7876222)
chr6 (55-143)||(12652817-12652905)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 5e-58; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 38293393 - 38293559
Alignment:
Q  21 ctccgatccctttcacttcttcatcaagagggatgttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaa 120  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  38293393 ctccgatccctttaatttcttcatcaagagggatgttttgggtcactttttgattcaaaatcactcatcttcatcattttctat-gtatttcaatcaaaa 38293491  T
Q  121 taagtgatttcacatagatctagttcnnnnnnnnncttctgtgatttcttcgtacgagtgcagtgttat 189  Q
    ||||||||||||||||||||||||||         |||| |||||||||||||||||||||||||||||    
T  38293492 taagtgatttcacatagatctagttctttttttttcttc-gtgatttcttcgtacgagtgcagtgttat 38293559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 32680760 - 32680694
Alignment:
Q  77 gaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  32680760 gaaatcactcatcttcatctttttctct-ctatttcaatctaaataagtgactttcacatagatctag 32680694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 3270428 - 3270340
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || ||||   |||||||||||| |||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  3270428 gttttgggtcaattcttgacctgaaatcactcattttcatctttttctttt-tatttcaatctaaataagtgattttcacatagatctag 3270340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 34598897 - 34598959
Alignment:
Q  83 actcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctagtt 145  Q
    ||||||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||||    
T  34598897 actcatcttcatctttttctctc-tatttcaatctaaataagtgattttcacatagatctagtt 34598959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 21570608 - 21570520
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || ||||   |||||||| | |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  21570608 gttttgggtcaattcttgacctgaaatcacccctcttcatctttttctcta-tatttcaatctaaataagtgattttcacatagatctag 21570520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 30420558 - 30420646
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||| ||| |||||||   |||||||| | |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  30420558 gttttggatcaatttttgacctgaaatcacccctcttcatctttttctctt-tatttcaatctaaataagtgattttcacatagatctag 30420646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 40660107 - 40660043
Alignment:
Q  77 gaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    |||||||| |||||||||| |||||| |   ||||||||| |||||||||| ||||||||||||||||    
T  40660107 gaaatcacacatcttcatctttttctct---atttcaatctaaataagtgattttcacatagatctag 40660043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 45128085 - 45128173
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || ||||   |||||||| | |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  45128085 gttttgggtcaattcttgacctgaaatcacccctcttcatctttttctct-ttatttcaatctaaataagtgactttcacatagatctag 45128173  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 25162311 - 25162398
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtgatttcacatagatctag 143  Q
    |||||| |||| || |||||| |||||||| |||||||||| |||||| |  |||||||||| ||||||||||||||||||||||||||    
T  25162311 gttttgtgtcaattcttgatttgaaatcacccatcttcatctttttctctc-tatttcaatctaaataagtgatttcacatagatctag 25162398  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 22802897 - 22802970
Alignment:
Q  56 ttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtgattt 130  Q
    |||||||||| |||||||   |||||||||| |||||||| |||||| |  |||||||||| |||||||||||||    
T  22802897 ttttgggtcaatttttgacatgaaatcactcctcttcatctttttctctc-tatttcaatctaaataagtgattt 22802970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 32607375 - 32607430
Alignment:
Q  88 tcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  32607375 tcttcatcattttctctt-tatttcaatctaaataagtgattttcacatagatctag 32607430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 20116460 - 20116548
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| |||||||   |||||||| | |||||||| ||||||||  |||||||||| |||||||||| ||||||||||||||||    
T  20116460 gttttgggtcaatttttgacctgaaatcacccttcttcatctttttctat-ctatttcaatctaaataagtgattttcacatagatctag 20116548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 42311157 - 42311245
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtgat-ttcacatagatctag 143  Q
    ||||||||||| || ||||   |||||||  | ||||||||||||||| |  |||||||||| ||||||||||| |||||||||||||||    
T  42311157 gttttgggtcaattcttgacctgaaatcatccctcttcatcattttctctc-tatttcaatctaaataagtgatattcacatagatctag 42311245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 46821891 - 46821979
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || ||||   |||||||| | |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  46821891 gttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctt-tatttcaatctaaataagtgattttcacatagatctag 46821979  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 10389953 - 10389865
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || ||||   ||||||||||||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  10389953 gttttgggtcaattcttgacctgaaatcactcatcttcatctttttctct-ctatttcaatctaaataagtgactttcacatagatctag 10389865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 43444282 - 43444370
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| ||||||||  |||||||| |||||||||| |||||| |  |||||||||| |||||||||| ||||||||| ||||||    
T  43444282 gttttgggtcaatttttgatctgaaatcacccatcttcatctttttctct-ttatttcaatctaaataagtgattttcacatatatctag 43444370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 37188792 - 37188702
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctagtt 145  Q
    ||||||||||| || ||||   ||||||||||||||||||| |||||| |  |||||||||| |||||||||| ||||||||| ||||||||    
T  37188792 gttttgggtcaattattgacctgaaatcactcatcttcatctttttctct-atatttcaatctaaataagtgattttcacatatatctagtt 37188702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 51317897 - 51317963
Alignment:
Q  77 gaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  51317897 gaaatcactcatcttcatctttttctct-ctatttcaatctaaataagtgattttcacatagatctag 51317963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 21090042 - 21090126
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagat 139  Q
    ||||||||||| | ||||||  ||||||||||||||||||| |||||| |  |||||||||  |||||||||| ||||||||||||    
T  21090042 gttttgggtcaatctttgatctgaaatcactcatcttcatctttttctct-ctatttcaatataaataagtgattttcacatagat 21090126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 4643798 - 4643834
Alignment:
Q  107 tatttcaatcaaaataagtgatttcacatagatctag 143  Q
    |||||||||| ||||||||||||||||||||||||||    
T  4643798 tatttcaatctaaataagtgatttcacatagatctag 4643834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 47416774 - 47416860
Alignment:
Q  56 ttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatcta 142  Q
    |||||||||| || |||| | |||||||| | |||||||| |||||| |  |||||||||| |||||||||| |||||||||||||||    
T  47416774 ttttgggtcaattattgacttgaaatcacccctcttcatctttttctctt-tatttcaatctaaataagtgattttcacatagatcta 47416860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 43154220 - 43154133
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || |||| | |||||||| | |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  43154220 gttttgggtcaattcttgacttgaaatcacccctcttcatc-ttttctctc-tatttcaatctaaataagtgattttcacatagatctag 43154133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 28035020 - 28035108
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || ||||   ||||||||||||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  28035020 gttttgggtcaattattgacctgaaatcactcatcttcatctttttctct-ctatttcaatctaaataagtgattttcacatagatctag 28035108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 14545423 - 14545489
Alignment:
Q  77 gaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  14545423 gaaatcactcatcttcatctttttctct-atatttcaatctaaataagtgattttcacatagatctag 14545489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 20266165 - 20266271
Alignment:
Q  37 ttcttcatcaagagggatgttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacat 135  Q
    ||||||||| || |||  ||||||||||| || |||||   ||||||| |||||||||| |||||| |  |||||||||| |||||||||| ||||||||    
T  20266165 ttcttcatcgagggggtggttttgggtcaattcttgatctaaaatcacccatcttcatctttttctct-ttatttcaatctaaataagtgattttcacat 20266263  T
Q  136 agatctag 143  Q
    ||||||||    
T  20266264 agatctag 20266271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 35584799 - 35584733
Alignment:
Q  77 gaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  35584799 gaaatcactcatcttcatctttttctct-ttatttcaatctaaataagtgattttcacatagatctag 35584733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 40646592 - 40646657
Alignment:
Q  78 aaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    |||||||||||||||||| ||||||||  |||||||||| |||||||||| |||||| |||||||||    
T  40646592 aaatcactcatcttcatctttttctat-ttatttcaatctaaataagtgattttcacgtagatctag 40646657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 25728159 - 25728071
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || ||||   |||||||||| |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  25728159 gttttgggtcaattcttgacctgaaatcactcctcttcatctttttctctt-tatttcaatctaaataagtgattttcacatagatctag 25728071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 27872620 - 27872707
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatcta 142  Q
    ||||||||||| |||||||   |||||||| |||||||||| |||||  |  |||||||||| |||||||||| |||||||||||||||    
T  27872620 gttttgggtcaatttttgacatgaaatcacccatcttcatctttttcgct-ctatttcaatctaaataagtgattttcacatagatcta 27872707  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 30818545 - 30818455
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctagtt 145  Q
    ||||||||||| || ||||   |||||||| |||||||||| |||||| |  |||||||||| |||||||||| ||||||||| ||||||||    
T  30818545 gttttgggtcaattattgacctgaaatcacccatcttcatctttttctctc-tatttcaatctaaataagtgattttcacataaatctagtt 30818455  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 38520711 - 38520646
Alignment:
Q  77 gaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatcta 142  Q
    ||||||||||||||||||| |||||| |  |||||| ||| |||||||||| |||||||||||||||    
T  38520711 gaaatcactcatcttcatctttttctct-ctatttcgatctaaataagtgattttcacatagatcta 38520646  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 7997668 - 7997756
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||| | ||||||||  |||||||| | |||||||| |||||| |  |||||||||  |||||||||| ||||||||||||||||    
T  7997668 gttttgggttaatttttgatctgaaatcacccttcttcatctttttctctt-tatttcaatataaataagtgattttcacatagatctag 7997756  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 18569510 - 18569422
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| |||||||   ||||||||   |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  18569510 gttttgggtcaatttttgacaagaaatcacctgtcttcatctttttctctc-tatttcaatctaaataagtgattttcacatagatctag 18569422  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 143
Target Start/End: Complemental strand, 25406483 - 25406396
Alignment:
Q  56 ttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    |||||||||| || ||||   |||||||| | |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  25406483 ttttgggtcaattcttgacctgaaatcacacctcttcatctttttctctc-tatttcaatctaaataagtgactttcacatagatctag 25406396  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 41081899 - 41081815
Alignment:
Q  60 gggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtgattt-cacatagatctag 143  Q
    |||||| |||||||   ||||||||||||||||||| |||||||    ||||||||| | ||||||||||| | |||||||||||    
T  41081899 gggtcaatttttgacctgaaatcactcatcttcatctttttctagtccatttcaatctatataagtgatttgcgcatagatctag 41081815  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 45426262 - 45426175
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatcta 142  Q
    ||||||||||| || |||||| ||||||||  || |||||| |||||| |  ||||| |||| |||||||||| |||||||||||||||    
T  45426262 gttttgggtcaattcttgatttgaaatcacctattttcatctttttctct-ctatttaaatctaaataagtgattttcacatagatcta 45426175  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 35580324 - 35580430
Alignment:
Q  37 ttcttcatcaagagggatgttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacat 135  Q
    ||||||||  ||||||  ||||||||||| |||||||    |||||||||||||||||| |||||| |  |||||||||  |||||||||| ||||||||    
T  35580324 ttcttcattgagagggtggttttgggtcaatttttgacataaaatcactcatcttcatctttttctct-ctatttcaatttaaataagtgattttcacat 35580422  T
Q  136 agatctag 143  Q
    ||||||||    
T  35580423 agatctag 35580430  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 14907102 - 14907036
Alignment:
Q  77 gaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    |||||||| |||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  14907102 gaaatcacccatcttcatctttttctctt-tatttcaatctaaataagtgattttcacatagatctag 14907036  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 2655777 - 2655841
Alignment:
Q  79 aatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    |||||| |||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  2655777 aatcacccatcttcatctttttctctt-tatttcaatctaaataagtgattttcacatagatctag 2655841  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 9072601 - 9072689
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| ||||||| | |||||||| | |||||||| |||||| |  |||||||||  |||||||||| ||||||||| ||||||    
T  9072601 gttttgggtcaatttttgacttgaaatcacccctcttcatctttttctct-ctatttcaatttaaataagtgactttcacataaatctag 9072689  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 26578151 - 26578217
Alignment:
Q  77 gaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  26578151 gaaatcactcatcttcatctttttctct-ttatttcaatctaaataagtgattttcacatagatctag 26578217  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 30371604 - 30371692
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| | |||||   |||||||| | |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  30371604 gttttgggtcaatatttgacctgaaatcacccctcttcatctttttctctt-tatttcaatctaaataagtgattttcacatagatctag 30371692  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 10649334 - 10649421
Alignment:
Q  56 ttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    |||||||||| || ||||   |||||||| | |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  10649334 ttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctt-tatttcaatctaaataagtgattttcacatagatctag 10649421  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 23947517 - 23947429
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || ||||   |||||||| |||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  23947517 gttttgggtcaattcttgacctgaaatcacccatcttcatcgttttctctc-tatttcaatctaaataagtgattttcacatagatctag 23947429  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 7876222 - 7876157
Alignment:
Q  78 aaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||| |||||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  7876222 aaatcacccatcttcatctttttctctt-tatttcaatctaaataagtgattttcacatagatctag 7876157  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 12652817 - 12652905
Alignment:
Q  55 gttttgggtcactttttgattcgaaatcactcatcttcatcattttctatggtatttcaatcaaaataagtga-tttcacatagatctag 143  Q
    ||||||||||| || ||||   |||||||| | |||||||| |||||| |  |||||||||| |||||||||| ||||||||||||||||    
T  12652817 gttttgggtcaattcttgacctgaaatcacccctcttcatctttttctctc-tatttcaatctaaataagtgattttcacatagatctag 12652905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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