View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_4 (Length: 670)
Name: NF18690_low_4
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_4 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 477; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Complemental strand, 3594904 - 3594274
Alignment:
| Q |
1 |
ggttggtgagggtattcaatttgagctgttttcnnnnnnnnnnnnatggtcttgaaatgtgacttggaatttgttgtttgttgttacaggagtgggaagg |
100 |
Q |
| |
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|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3594904 |
ggttggtgagggtattcagtttgagctgttttcgtgtgtgtgtgtatggtcttgaaatgtgacttggaatttattgtttgttgttacaggagtgggaagg |
3594805 |
T |
|
| Q |
101 |
aagaacaaatattgccatgtctaacactgttacaacagaaattcgtggaagtctgatgcatatgtctatcggtaaaactaaaactactgggaaagtcgac |
200 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594804 |
aagaacaaatattggcatgtctaacactgttaccacagaaattcgtggaagtctgatgcatatgtctatcggtaaaactaaaactactgggaaagtcgac |
3594705 |
T |
|
| Q |
201 |
cgagccactgttgagaacgtatttaaccaataattttgttcttacaattcattttcaataattttaatacaactaacacaaaaattccctcaggcaattg |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3594704 |
cgagccactgttgagaacgtacgtaaccaatcattttcttcttacaattcattttcaataatttgtatacaactaacacaaaaattccctcaggcaattg |
3594605 |
T |
|
| Q |
301 |
atctcagaacgcgcatggctttatttaagatgatgaacaataatctgtttcagcatattaatggatgcatttcaactggaaaagaagtatgct------- |
393 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594604 |
atctcagaacgcgcatggctatatttaagatgatcaacaataatctgtttcagcatattaatggatgcatttcaactggaaaagaagtatgcttttattt |
3594505 |
T |
|
| Q |
394 |
-----acacgtttcagttttctgtcattttgtcattacagttttataacatggacttgatgtgatgcatgtccataattatcaggcaaatgtttatcatg |
488 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3594504 |
tattcacacgtttcagttttctgtcatcttgtcattacagttttataacatggacttgatgtgatgcatgtccataattatcaggcaaatgtttatcatg |
3594405 |
T |
|
| Q |
489 |
ctaccgattctgatggtcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtaccttgcttgcgtaattcattgttctaact |
588 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
3594404 |
ctaccgattccgatggtcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac----cttgcgtaattgatcgttctaact |
3594309 |
T |
|
| Q |
589 |
tctcaacgctgaaagttacacaggctactattatc |
623 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
3594308 |
tctcaacgctgaaagttacacaggctactattatc |
3594274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 78 - 217
Target Start/End: Complemental strand, 28935164 - 28935025
Alignment:
| Q |
78 |
ttgttgttacaggagtgggaaggaagaacaaatattgccatgtctaacactgttacaacagaaattcgtggaagtctgatgcatatgtctatcggtaaaa |
177 |
Q |
| |
|
|||||||| ||||| | ||||||||||| ||||||||||||||||||| |||||||||||||||||||||| || ||| | ||| | || ||||||| |
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| T |
28935164 |
ttgttgttgcaggatttggaaggaagaatgaatattgccatgtctaacagtgttacaacagaaattcgtggatgtgtgaaagagatggccattggtaaaa |
28935065 |
T |
|
| Q |
178 |
ctaaaactactgggaaagtcgaccgagccactgttgagaa |
217 |
Q |
| |
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||||||||| || |||| ||||||||||||||||||||| |
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| T |
28935064 |
ctaaaactaatgacaaagccgaccgagccactgttgagaa |
28935025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 470 - 560
Target Start/End: Complemental strand, 28934243 - 28934153
Alignment:
| Q |
470 |
caggcaaatgtttatcatgctaccgattctgatggtcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
560 |
Q |
| |
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||||||||||||||||||||||| | || ||||||| |||| ||||||||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
28934243 |
caggcaaatgtttatcatgctacaaaatccgatggtcgagaacttgcaattaaaatatacaaaacatctgttctggcatttaagtgagtac |
28934153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 247 - 391
Target Start/End: Original strand, 35714082 - 35714226
Alignment:
| Q |
247 |
attcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatct |
346 |
Q |
| |
|
|||||||||||||| ||| || ||||||||| |||| || | |||||||||||| |||||||||||||| |||||| |||||| | || | | | |
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|
| T |
35714082 |
attcattttcaatattttgcatgcaactaacaataaaactctcctaggcaattgatcccagaacgcgcatggttttattcaagatgctcaatagaggtgt |
35714181 |
T |
|
| Q |
347 |
gtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
391 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
35714182 |
gtttcaagatatgaatggatgcatttcaactggaaaggaagtatg |
35714226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 505 - 560
Target Start/End: Original strand, 35714611 - 35714666
Alignment:
| Q |
505 |
tcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
560 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
35714611 |
tcaagaacttgcaattaaaatatacaaaacatctgttctggtatttaagtaagtac |
35714666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 246 - 391
Target Start/End: Complemental strand, 28934829 - 28934684
Alignment:
| Q |
246 |
aattcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatc |
345 |
Q |
| |
|
|||||||| ||||||||| | | |||||||| | |||| |||| |||||||||||| |||||||||||||| ||| |||||||||||||| | |
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| T |
28934829 |
aattcattctcaataattcttgtgcaactaacgctaaaaatcccctaggcaattgatcccagaacgcgcatggaaatatacaagatgatgaacaaacgtt |
28934730 |
T |
|
| Q |
346 |
tgtttcagcatattaatggatgcatttcaactggaaaagaagtatg |
391 |
Q |
| |
|
|||||| || ||||||||||||| |||| ||||||||||||| |
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|
| T |
28934729 |
ggtttcaagattccaatggatgcattttaactagaaaagaagtatg |
28934684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 391
Target Start/End: Complemental strand, 28934427 - 28934396
Alignment:
| Q |
360 |
aatggatgcatttcaactggaaaagaagtatg |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
28934427 |
aatggatgcatttcaactggaaaagaagtatg |
28934396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 77 - 391
Target Start/End: Complemental strand, 8491229 - 8490889
Alignment:
| Q |
77 |
tttgttgttacaggagtgggaaggaagaacaaatattgccatgtctaacactgttacaacagaaattcgtggaagtctgatgcatatgtctatcggtaaa |
176 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8491229 |
tttgttgttgcaggagtgggaaggaagaacaaatattgccatgtctaacactgtcaccacagaaattcgtggaagtctgatgcatatgtctatcggtaaa |
8491130 |
T |
|
| Q |
177 |
actaaaactactgggaaa-----gtcgaccgagccactgttgagaacgtatttaaccaataatttt------------gttcttac------------aa |
247 |
Q |
| |
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|||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| ||||| |||||||| || |
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|
| T |
8491129 |
actaaaactactaggaaattaaagtcgaccga---actgttgagaacgtatgtaaccaatcattttttcataagcattgttcttacttaagtttatctaa |
8491033 |
T |
|
| Q |
248 |
ttcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaagatgatgaacaataatctg |
347 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8491032 |
ttcattttcaatcatttgaatacaactaacacaaaaattccctcaggcaattgatctcaggacgcgcatggctttatttaagatgatgaacaataatctg |
8490933 |
T |
|
| Q |
348 |
tttcagcatattaatggatgcatttcaactggaaaagaagtatg |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8490932 |
tttcagcatattaatggatgcatttcaactggaaaagaagtatg |
8490889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 465 - 623
Target Start/End: Complemental strand, 8490772 - 8490618
Alignment:
| Q |
465 |
attatcaggcaaatgtttatcatgctaccgattctgatggtcaagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtaccttg |
564 |
Q |
| |
|
||||||||| |||||||||||||| |||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
8490772 |
attatcaggaaaatgtttatcatgataccaattccgatggtaaagaatatgcaattaaaataaacaaaacatctgttctgggatttaagtaagtacc--- |
8490676 |
T |
|
| Q |
565 |
cttgcgtaattcattgttctaacttctcaacgctgaaagttacacaggctactattatc |
623 |
Q |
| |
|
||||||| || ||||||||||||||| |||||||||||||||||||| |||||||||| |
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|
| T |
8490675 |
-ttgcgtatttgattgttctaacttctgaacgctgaaagttacacaggatactattatc |
8490618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 398 - 449
Target Start/End: Complemental strand, 8490857 - 8490804
Alignment:
| Q |
398 |
gtttcagttttctgtcattttgtcattacagttt--tataacatggacttgatg |
449 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
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| T |
8490857 |
gtttcagttttctgtcatcttgtcattacagttttatataacatggacttgatg |
8490804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 330
Target Start/End: Complemental strand, 5191 - 5108
Alignment:
| Q |
247 |
attcattttcaataattttaatacaactaacacaaaaattccctcaggcaattgatctcagaacgcgcatggctttatttaaga |
330 |
Q |
| |
|
|||||||||||||||||| || ||| ||||| ||||||||| ||||||| |||| |||||||||| ||||||||| |||| |
|
|
| T |
5191 |
attcattttcaataatttgtatgcaaacaacactaaaattcccctaggcaatggatcctagaacgcgcaaggctttattcaaga |
5108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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