View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18690_low_8 (Length: 507)
Name: NF18690_low_8
Description: NF18690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18690_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 289 - 491
Target Start/End: Complemental strand, 36850575 - 36850373
Alignment:
| Q |
289 |
gttgtacctcaacaatgaccctaaagtaattaagaccatattcactcatgaaaggagctaattcttgaactttttgacgataacggccgtctaatggaga |
388 |
Q |
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| T |
36850575 |
gttgtacctcaacaatgaccctaaagtaattaagaccatattcactcatgaaaggagctaattcttgaactttttgacgataacgaccgtctaatggaga |
36850476 |
T |
|
| Q |
389 |
taaagctgttaaagtagagagttcaaagtcgccggaatgaggtcggaacatgttagtgttgctggtggcgatgagggatttggaagtgaagtgagaggga |
488 |
Q |
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| T |
36850475 |
taaagctgttaaagtagagagttcaaagtcgccggaatgaggtcggaacatgttagtgttgctggtggcgatgagggatttggaagtgaagtgagaggga |
36850376 |
T |
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| Q |
489 |
aaa |
491 |
Q |
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||| |
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| T |
36850375 |
aaa |
36850373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 291 - 491
Target Start/End: Complemental strand, 36844455 - 36844255
Alignment:
| Q |
291 |
tgtacctcaacaatgaccctaaagtaattaagaccatattcactcatgaaaggagctaattcttgaactttttgacgataacggccgtctaatggagata |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||||||||||| |||||||| |||| |
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| T |
36844455 |
tgtacctcaacaatgaccctaaagtaattaagaccatattcactcatgagaggagttaattcttgcattttttgacgataacggccatctaatggggata |
36844356 |
T |
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| Q |
391 |
aagctgttaaagtagagagttcaaagtcgccggaatgaggtcggaacatgttagtgttgctggtggcgatgagggatttggaagtgaagtgagagggaaa |
490 |
Q |
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| T |
36844355 |
aagctgttaaagttgagagttcaaagtcgccagaatgagcttggagcatgttgatgttggtggtggcgatgagggatttggaggtgaagtgagagggaaa |
36844256 |
T |
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| Q |
491 |
a |
491 |
Q |
| |
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| |
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| T |
36844255 |
a |
36844255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 36850852 - 36850776
Alignment:
| Q |
12 |
aagcaaagggtagtgaaaaaatcgaaaacaaataatggggtacctcaccaatgaccctatagtaattcactccatat |
88 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36850852 |
aagcaaagggtagtgaaaaaatcgaaaaaaaataatggggtacctcaccaatgaccctatagtaattcactccatat |
36850776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 36850699 - 36850637
Alignment:
| Q |
165 |
ctatagggtaacttagcaatgatcctatagtaattgagttcatataaacacaaacataacaat |
227 |
Q |
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| T |
36850699 |
ctatagggtaacttagcaatgatcctatagtaattgagttcatataaacacaaacataacaat |
36850637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 36850804 - 36850760
Alignment:
| Q |
181 |
caatgatcctatagtaattgagttcatataaacacaaacataaca |
225 |
Q |
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|||||| |||||||||||| | | ||||||||||||||||||||| |
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| T |
36850804 |
caatgaccctatagtaattcactccatataaacacaaacataaca |
36850760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 126; Significance: 9e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 334 - 491
Target Start/End: Original strand, 35038112 - 35038269
Alignment:
| Q |
334 |
tcatgaaaggagctaattcttgaactttttgacgataacggccgtctaatggagataaagctgttaaagtagagagttcaaagtcgccggaatgaggtcg |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
35038112 |
tcatgaaaggagctaattcttgaactttttgacgataacgaccgtctaacggagataaagctgttaaagtagagagttcaaagtcgccggaacgagctcg |
35038211 |
T |
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| Q |
434 |
gaacatgttagtgttgctggtggcgatgagggatttggaagtgaagtgagagggaaaa |
491 |
Q |
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||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
35038212 |
gaacatgttggtgttattggtggcgatgagggatttggaggtgaagtgagagggaaaa |
35038269 |
T |
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