View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18691_low_1 (Length: 519)

Name: NF18691_low_1
Description: NF18691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18691_low_1
NF18691_low_1
[»] chr3 (19 HSPs)
chr3 (18-506)||(8592443-8592927)
chr3 (147-219)||(6749747-6749819)
chr3 (128-219)||(6418364-6418455)
chr3 (96-219)||(6471925-6472051)
chr3 (103-213)||(6823141-6823251)
chr3 (106-219)||(6510840-6510953)
chr3 (306-387)||(6552075-6552156)
chr3 (328-409)||(6950435-6950516)
chr3 (148-219)||(7575856-7575927)
chr3 (281-374)||(6584658-6584751)
chr3 (103-184)||(8473440-8473521)
chr3 (357-409)||(6418172-6418224)
chr3 (300-409)||(6822324-6822433)
chr3 (111-224)||(7588637-7588753)
chr3 (104-224)||(6552244-6552361)
chr3 (306-373)||(6510689-6510756)
chr3 (103-213)||(6511204-6511313)
chr3 (306-409)||(8473531-8473636)
chr3 (465-493)||(6750087-6750115)
[»] scaffold0445 (1 HSPs)
scaffold0445 (106-219)||(8664-8777)
[»] scaffold2089 (1 HSPs)
scaffold2089 (106-219)||(931-1046)
[»] scaffold0425 (2 HSPs)
scaffold0425 (281-370)||(5040-5132)
scaffold0425 (104-224)||(5214-5331)


Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 506
Target Start/End: Original strand, 8592443 - 8592927
Alignment:
Q  18 aatgctaaacaacctacttaaaggaaaatcctagatgtctgactcaatagtataattgaaaataacactcattttactacagattacataacataatttg 117  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  8592443 aatgctaaacaacctacttaaagacaaatcctagatgtctgactcaatagtatagttgaaagtaacactcattttactacagattacataacataatttg 8592542  T
Q  118 aaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtcagaaaaacacaaactgatatctgccaag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8592543 aaagattagcttttgtaaacaaaggaaaggattacctgaaagtcggagaacacacaaattgagatctttgtcagaaaaacacaaactgatatctgccaag 8592642  T
Q  218 gagagagtgtnnnnnnnnnnnnntagagaaagatttagaggcaatataaaagaa---gaagtattaagtaaaaaatgtgttcactattcagagagagaag 314  Q
     ||||||| |             |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  8592643 aagagagtat--aaaaaaaaaattagagaaagatttagaggcaatataaaagaagacgaagtattaagtaaaaaatgtgttcactattcagagagagaag 8592740  T
Q  315 ttacttgagagtatgtggaacaaacaaactcaataactagaaagatctcccaaagaaagacttaatggaagcacaacaaaatatcaatgatgaagaagat 414  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8592741 ttacttgagagtatgtggaacaaacaaactcaataactagacagatctcccaaagaaagacttaatggaagcacaacaaaatatcaatgatgaagaagat 8592840  T
Q  415 gaatgagatgatgtacccnnnnnnnatcaaatgattgaacatataatataatatacgcgtctttctacacaccacacaaaaggatagaagta 506  Q
    |||||||||||||||| |       |||||||||||||||     ||||||||||||| |||||||||||||||| ||||||||||||||||    
T  8592841 gaatgagatgatgtactctttttttatcaaatgattgaac-----atataatatacgcatctttctacacaccacccaaaaggatagaagta 8592927  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 6749747 - 6749819
Alignment:
Q  147 gattacctgaaagtttgagaacacacaaattgagatctttgtcagaaaaacacaaactgatatctgccaagga 219  Q
    |||||||||||||| |||||||| |||||||||||||||||||  |||||||||| |||| ||||||||||||    
T  6749747 gattacctgaaagtgtgagaacaaacaaattgagatctttgtctcaaaaacacaagctgagatctgccaagga 6749819  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 6418455 - 6418364
Alignment:
Q  128 ttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtcagaaaaacacaaactgatatctgccaagga 219  Q
    |||||| | ||||||||| |||||||||||||| |||||||| ||| ||||||||||||| ||| ||| |||||||| | ||||||||||||    
T  6418455 ttttgttagcaaaggaaaagattacctgaaagtgtgagaacaaacagattgagatctttgacagtaaagcacaaacttagatctgccaagga 6418364  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 219
Target Start/End: Complemental strand, 6472051 - 6471925
Alignment:
Q  96 acagattacataacataatttgaaagattagcttttgtaaacaaaggaaag----gattacctgaaagtttgagaacacacaaattgagatctttgtcag 191  Q
    ||||||| |||||||||||||||||| | || | |||| ||||||||||      |||||||||||||| |||||||| |||||||||||||||||||      
T  6472051 acagattgcataacataatttgaaagctaag-tcttgttaacaaaggaagaatgagattacctgaaagtgtgagaacaaacaaattgagatctttgtctc 6471953  T
Q  192 aaaaacacaaactgatatctgccaagga 219  Q
    || ||||||| |||| ||||||||||||    
T  6471952 aagaacacaagctgagatctgccaagga 6471925  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 6823251 - 6823141
Alignment:
Q  103 acataacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtcagaaaaacacaaa 202  Q
    |||||||||||||||||| |||| ||||  | ||||| ||||  |||||||| ||| | |||||||| ||||  ||||||||||||| ||||||||||||    
T  6823251 acataacataatttgaaacattaactttgattaacaagggaagagattacctaaaattgtgagaacaaacaatctgagatctttgtcggaaaaacacaaa 6823152  T
Q  203 ctgatatctgc 213  Q
    |||| ||||||    
T  6823151 ctgagatctgc 6823141  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 6510953 - 6510840
Alignment:
Q  106 taacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtcagaaaaacacaaactg 205  Q
    |||||| |||| |||||||| || |||| || |||| ||  || || |||||||| |||||| | ||||| |||||||||||||| ||||||||||||||    
T  6510953 taacatgatttaaaagattaactgttgttaagaaagtaagagagtatctgaaagtgtgagaagaaacaaactgagatctttgtcacaaaaacacaaactg 6510854  T
Q  206 atatctgccaagga 219  Q
    | ||||||||||||    
T  6510853 agatctgccaagga 6510840  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 6552156 - 6552075
Alignment:
Q  306 agagagaagttacttgagagtatgtggaacaaacaaactcaataactagaaagatctcccaaagaaagacttaatggaagca 387  Q
    ||||| ||||||||||| ||| ||||||||||||||||| || |||| ||||||||||||||||||| |||||  |||||||    
T  6552156 agagataagttacttgaaagtgtgtggaacaaacaaactgaagaacttgaaagatctcccaaagaaatacttagaggaagca 6552075  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 328 - 409
Target Start/End: Original strand, 6950435 - 6950516
Alignment:
Q  328 tgtggaacaaacaaactcaataactagaaagatctcccaaagaaagacttaatggaagcacaacaaaatatcaatgatgaag 409  Q
    ||||||||||| ||| | || |||| |||||||||||||||||| ||||||  ||||||||||||| |||||||||||||||    
T  6950435 tgtggaacaaagaaagtgaagaacttgaaagatctcccaaagaaggacttagaggaagcacaacaagatatcaatgatgaag 6950516  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 7575856 - 7575927
Alignment:
Q  148 attacctgaaagtttgagaacacacaaattgagatctttgtcagaaaaacacaaactgatatctgccaagga 219  Q
    ||||||||||||| |||||||| |||||||||||||||||| | ||||||| ||||||| ||||| ||||||    
T  7575856 attacctgaaagtgtgagaacaaacaaattgagatctttgtgacaaaaacaaaaactgagatctgacaagga 7575927  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 374
Target Start/End: Complemental strand, 6584751 - 6584658
Alignment:
Q  281 agtaaaaaatgtgttcactattcagagagagaagttacttgagagtatgtggaacaaacaaactcaataactagaaagatctcccaaagaaaga 374  Q
    ||||||||| ||||| | |||| |||||||||| |||||||| ||| ||||||||||||||||  || |||| |||| |||||||||| |||||    
T  6584751 agtaaaaaacgtgtttagtatttagagagagaaattacttgaaagtgtgtggaacaaacaaaccgaagaactcgaaaaatctcccaaaaaaaga 6584658  T

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Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 8473440 - 8473521
Alignment:
Q  103 acataacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatct 184  Q
    ||||||||||||||||||||||| ||||||| || ||| |||  |||||||||||||| ||| |||| ||||| ||||||||    
T  8473440 acataacataatttgaaagattaacttttgttaagaaatgaagagattacctgaaagtgtgaaaacaaacaaactgagatct 8473521  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 409
Target Start/End: Complemental strand, 6418224 - 6418172
Alignment:
Q  357 agatctcccaaagaaagacttaatggaagcacaacaaaatatcaatgatgaag 409  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  6418224 agatctcccaaagaaagacttagaggaagcacaacaagatatcaatgatgaag 6418172  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 409
Target Start/End: Complemental strand, 6822433 - 6822324
Alignment:
Q  300 attcagagagagaagttacttgagagtatgtggaacaaacaaactcaataactagaaagatctcccaaagaaagacttaatggaagcacaacaaaatatc 399  Q
    ||||| |||||||| |||||||| |||   ||||| ||||||| | || |||| |||||||| ||||||||||||||||  |||||||   ||||||||     
T  6822433 attcaaagagagaaattacttgaaagtgaatggaagaaacaaagtgaagaacttgaaagatcacccaaagaaagacttagaggaagcaatgcaaaatatt 6822334  T
Q  400 aatgatgaag 409  Q
    ||||||||||    
T  6822333 aatgatgaag 6822324  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 7588637 - 7588753
Alignment:
Q  111 taatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtcagaaa--aacac-aaactgat 207  Q
    ||||||||||||| | |||||   ||| ||||||  |||||||||||||| |||||||| ||||| | |||||||||||| |||  ||||| |||||||     
T  7588637 taatttgaaagatgaacttttagtaaccaaggaagagattacctgaaagtgtgagaacaaacaaactaagatctttgtcaaaaaataacactaaactgag 7588736  T
Q  208 atctgccaaggagagag 224  Q
    |||||||||||| ||||    
T  7588737 atctgccaaggaaagag 7588753  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 6552361 - 6552244
Alignment:
Q  104 cataacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtcag-aaaaacacaaa 202  Q
    |||||||||  ||||||||||| ||||||| ||||||  ||  |||||||| ||||| |||||    ||||| ||||||||||||||| | ||| |||||    
T  6552361 cataacatatcttgaaagattaacttttgttaacaaataaagagattacctaaaagtgtgaga----acaaactgagatctttgtcagcacaaatacaaa 6552266  T
Q  203 ctgatatctgccaaggagagag 224  Q
    |||| |||||||||||| ||||    
T  6552265 ctgagatctgccaaggaaagag 6552244  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 373
Target Start/End: Complemental strand, 6510756 - 6510689
Alignment:
Q  306 agagagaagttacttgagagtatgtggaacaaacaaactcaataactagaaagatctcccaaagaaag 373  Q
    |||||||| |||||||| |||  |||||||||||||| | || |||| ||||||||||||||| ||||    
T  6510756 agagagaaattacttgaaagtgagtggaacaaacaaagtgaaaaacttgaaagatctcccaaacaaag 6510689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 6511313 - 6511204
Alignment:
Q  103 acataacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtcagaaaaacacaaa 202  Q
    |||| ||||||||||||| ||||  |||| | ||||||| | || | ||||||||||| | |||||| | ||   |||||||||||| ||||||||||||    
T  6511313 acatgacataatttgaaacattaaattttattaacaaagaagag-agtacctgaaagtgtaagaacaaataatcggagatctttgtcggaaaaacacaaa 6511215  T
Q  203 ctgatatctgc 213  Q
    |||| ||||||    
T  6511214 ctgagatctgc 6511204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 409
Target Start/End: Original strand, 8473531 - 8473636
Alignment:
Q  306 agagagaagttacttgagagtatgtg--gaacaaacaaactcaataactagaaagatctcccaaagaaagacttaatggaagcacaacaaaatatcaatg 403  Q
    |||||||| |||||||| ||| ||||  ||||||||||||  || ||||  | ||||||||||| ||||||||||  ||||||| || || ||||||||     
T  8473531 agagagaaattacttgaaagtgtgtgtggaacaaacaaaccgaagaactttagagatctcccaaggaaagacttagaggaagcagaataagatatcaatc 8473630  T
Q  404 atgaag 409  Q
    ||||||    
T  8473631 atgaag 8473636  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 493
Target Start/End: Original strand, 6750087 - 6750115
Alignment:
Q  465 atatacgcgtctttctacacaccacacaa 493  Q
    |||||||||||||||||||||||||||||    
T  6750087 atatacgcgtctttctacacaccacacaa 6750115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 8664 - 8777
Alignment:
Q  106 taacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtcagaaaaacacaaactg 205  Q
    ||||||||||| ||||||||  |||||| ||||||||||   ||||||||||| | | |||||| | |||||||||||||||||| ||||||||||||||    
T  8664 taacataatttaaaagattaagttttgttaacaaaggaagaaattacctgaaaatgtaagaacaaataaattgagatctttgtcacaaaaacacaaactg 8763  T
Q  206 atatctgccaagga 219  Q
    | ||||||||||||    
T  8764 agatctgccaagga 8777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2089 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold2089
Description:

Target: scaffold2089; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 1046 - 931
Alignment:
Q  106 taacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtcagaaaaac--acaaac 203  Q
    ||||||||||||||||||||  | |||| ||||||||||  |||||||||||||| |||||||| ||||| | |||||||||| | ||||||   |||||    
T  1046 taacataatttgaaagattaagtgttgttaacaaaggaagagattacctgaaagtgtgagaacaaacaaactaagatctttgtaaaaaaaaccaccaaac 947  T
Q  204 tgatatctgccaagga 219  Q
    ||| ||||||||||||    
T  946 tgagatctgccaagga 931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 370
Target Start/End: Complemental strand, 5132 - 5040
Alignment:
Q  281 agtaaaaaatgtgttcacta---ttcagagagagaagttacttgagagtatgtggaacaaacaaactcaataactagaaagatctcccaaaga 370  Q
    ||||||||||||||| ||||   || | ||||| ||||||||||| ||| ||||||||||||||||| || |||| |||||||||||||||||    
T  5132 agtaaaaaatgtgtttactaagatttaaagagataagttacttgaaagtgtgtggaacaaacaaactgaagaacttgaaagatctcccaaaga 5040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 224
Target Start/End: Complemental strand, 5331 - 5214
Alignment:
Q  104 cataacataatttgaaagattagcttttgtaaacaaaggaaaggattacctgaaagtttgagaacacacaaattgagatctttgtca-gaaaaacacaaa 202  Q
    |||||||||  ||||||||||| ||||||| ||||||  ||  |||||||| ||||| |||||    ||||| ||||||||||||||  | ||| |||||    
T  5331 cataacatatcttgaaagattaacttttgttaacaaataaagagattacctaaaagtgtgaga----acaaactgagatctttgtcaccacaaatacaaa 5236  T
Q  203 ctgatatctgccaaggagagag 224  Q
    |||| |||||||||||| ||||    
T  5235 ctgagatctgccaaggaaagag 5214  T

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