View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18691_low_2 (Length: 396)
Name: NF18691_low_2
Description: NF18691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18691_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 67 - 389
Target Start/End: Original strand, 48007571 - 48007883
Alignment:
| Q |
67 |
tcaccaccttagcttgtaaattctgattttctgttgggaaatttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgctagattaccg |
166 |
Q |
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| T |
48007571 |
tcaccaccttagcttgtaaattttgattttctgttggaaaatttggatatggtacagtttctttcttgcaaggttttgaatgaaatttgctagattaccg |
48007670 |
T |
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| Q |
167 |
aatagaaaatagggatatgatagctatatggtcgaccaaaggagattaggtttagtgaaaagtgtcagacgaaatgttcatatttagtgttaaatagctt |
266 |
Q |
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| T |
48007671 |
aatagaaaatagggatatgatatatatatggtcgaacaaaggagattaggtttagtgaaaagtgtcagacgaaatgttcatatttagtgttaaatagctt |
48007770 |
T |
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| Q |
267 |
ctcgaatatgattcttnnnnnnngatgatgtctatggtcaaactattactttcatgcattcttggttctccttctccatctaataataatagtcaaatat |
366 |
Q |
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| T |
48007771 |
ctcgaatatgattctt-aaaaaagatgatgtatatggtcaaactattactttcatgcattcttggttctccatc---------taataatagtcaaatat |
48007860 |
T |
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| Q |
367 |
tgtgctaacattcatctcactcg |
389 |
Q |
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|||| ||||||| || ||||||| |
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| T |
48007861 |
tgtgttaacattgatgtcactcg |
48007883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 1604199 - 1604338
Alignment:
| Q |
17 |
acattcaattctacaccttacaattggacatcatatccatgtagttgcactcaccaccttagcttgtaaattctgattttctgttgggaaatttggatat |
116 |
Q |
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| T |
1604199 |
acattcaattctacaccttaaaattggacattatatccatgtagttgcactcaccacct-agcttgtaaattttgattttctgttgggaaattcggatat |
1604297 |
T |
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| Q |
117 |
ggtacagtttctttcttgcaaggttttgaatgaaatttgct |
157 |
Q |
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| T |
1604298 |
ggtacagtttttttcttgcaaggttttgtatgaaatttgct |
1604338 |
T |
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