View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18691_low_3 (Length: 301)

Name: NF18691_low_3
Description: NF18691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18691_low_3
NF18691_low_3
[»] chr8 (13 HSPs)
chr8 (21-210)||(12026686-12026864)
chr8 (21-128)||(12043774-12043881)
chr8 (21-163)||(12056667-12056808)
chr8 (21-101)||(12057583-12057663)
chr8 (29-92)||(12039289-12039352)
chr8 (33-102)||(12059170-12059239)
chr8 (33-105)||(15651975-15652045)
chr8 (69-174)||(12044088-12044194)
chr8 (40-102)||(12139314-12139376)
chr8 (33-101)||(15628207-15628273)
chr8 (43-105)||(15608173-15608233)
chr8 (41-101)||(15616692-15616750)
chr8 (41-101)||(15639884-15639942)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 12026864 - 12026686
Alignment:
Q  21 accaattgatcttttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagatactgaacctattttctgcat 120  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||    
T  12026864 accaattgttcttttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattg-----------aacctattttctgcat 12026776  T
Q  121 gcgcattttttccgtaaaaatgtggcctttacaacggttcaaactaccactatatgacatttttcgctgataaagtgtatactatggcgg 210  Q
    | ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  12026775 gtgcatttttttcgtaaaaatgtggccattacaacggttcaaactaccactatatgactttttttgctgataaagtgtatattatggcgg 12026686  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 12043881 - 12043774
Alignment:
Q  21 accaattgatcttttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagatactgaacctattttctgcat 120  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12043881 accaattgttcttttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtaatcttattattgtcaagatactgaacctattttctgcat 12043782  T
Q  121 gcgcattt 128  Q
    ||| ||||    
T  12043781 gcggattt 12043774  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 12056808 - 12056667
Alignment:
Q  21 accaattgatcttttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagatactgaacctattttctgcat 120  Q
    ||||||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||| || || |||||||||||||||||| || ||||| |||    
T  12056808 accaattaatcttttttctattaatgtctatcagtttattgtgttgtatttttctgttgtaggctaataattgtcaagatactgaacata-tttctacat 12056710  T
Q  121 gcgcattttttccgtaaaaatgtggcctttacaacggttcaaa 163  Q
     |||||||||||| | |||| |||||| ||||| |||||||||    
T  12056709 tcgcattttttcctttaaaacgtggccattacagcggttcaaa 12056667  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 12057663 - 12057583
Alignment:
Q  21 accaattgatcttttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagata 101  Q
    |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  12057663 accaatggatcttttttctatgaatgtctatcagttgagtgtgttgtatttttctgttgtagtcttattattatcaagata 12057583  T

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Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 12039352 - 12039289
Alignment:
Q  29 atcttttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattatt 92  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12039352 atcttttttctatgaatgtctatcagttgagtgtgttgtatttttctgttgtagtcttattatt 12039289  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 12059239 - 12059170
Alignment:
Q  33 tttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagatac 102  Q
    |||||| |||||||||||||| |||| ||||||||| ||||||||||  |||||| ||||||| ||||||    
T  12059239 tttttctatgaatgtctatcacttgactgtgttgtaattttctgttgcggtcttactattgtccagatac 12059170  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 15651975 - 15652045
Alignment:
Q  33 tttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagatactga 105  Q
    |||||| |||||||||||||| |||| |||||||||||||   |||| ||||||||||||||| |||||||||    
T  15651975 tttttctatgaatgtctatcacttgactgtgttgtatttt--ggttgcagtcttattattgtctagatactga 15652045  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 12044194 - 12044088
Alignment:
Q  69 tttttctgttgtagtcttattattgtcaagatactgaacctattttctgcatgcgcattttttcc-gtaaaaatgtggcctttacaacggttcaaactac 167  Q
    ||||||| |||||||||||||||| |||||||| |||   | ||||| | ||||||||||||||| ||||||| ||  || ||||  |||||||||| ||    
T  12044194 tttttctcttgtagtcttattattatcaagatattgagtattttttcagaatgcgcattttttccagtaaaaaagtttccattacggcggttcaaaccac 12044095  T
Q  168 cactata 174  Q
    |||||||    
T  12044094 cactata 12044088  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 12139314 - 12139376
Alignment:
Q  40 atgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagatac 102  Q
    |||||||||||||| |||| ||||| |||||||||||||| ||||||| | ||||| ||||||    
T  12139314 atgaatgtctatcacttgactgtgtcgtatttttctgttgcagtcttactgttgtccagatac 12139376  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 15628207 - 15628273
Alignment:
Q  33 tttttccatgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagata 101  Q
    |||||| |||||||||||||| |||| |||||||||||||   |||| ||||||||||||||| |||||    
T  15628207 tttttctatgaatgtctatcacttgactgtgttgtatttt--ggttgcagtcttattattgtctagata 15628273  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 15608173 - 15608233
Alignment:
Q  43 aatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagatactga 105  Q
    ||||||||||| |||| |||||||||||||   |||| ||||||||||||||| |||||||||    
T  15608173 aatgtctatcacttgactgtgttgtatttt--ggttgcagtcttattattgtctagatactga 15608233  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 15616692 - 15616750
Alignment:
Q  41 tgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagata 101  Q
    ||||||||||||| |||| |||||||||||||   |||| ||||||||||||||| |||||    
T  15616692 tgaatgtctatcacttgactgtgttgtatttt--ggttgcagtcttattattgtctagata 15616750  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 101
Target Start/End: Original strand, 15639884 - 15639942
Alignment:
Q  41 tgaatgtctatcagttgattgtgttgtatttttctgttgtagtcttattattgtcaagata 101  Q
    ||||||||||||| |||| |||||||||||||   |||| ||||||||||||||| |||||    
T  15639884 tgaatgtctatcacttgactgtgttgtatttt--ggttgcagtcttattattgtctagata 15639942  T

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