View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18691_low_5 (Length: 202)

Name: NF18691_low_5
Description: NF18691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18691_low_5
NF18691_low_5
[»] chr2 (4 HSPs)
chr2 (1-202)||(42117323-42117524)
chr2 (1-153)||(30397366-30397517)
chr2 (157-193)||(29191781-29191817)
chr2 (161-195)||(14994749-14994783)
[»] chr6 (6 HSPs)
chr6 (1-157)||(18967578-18967733)
chr6 (1-113)||(23014999-23015110)
chr6 (162-195)||(7477028-7477061)
chr6 (162-195)||(7477394-7477427)
chr6 (162-195)||(7477760-7477793)
chr6 (161-193)||(7271654-7271686)
[»] chr3 (6 HSPs)
chr3 (1-157)||(24671487-24671642)
chr3 (10-157)||(4578785-4578931)
chr3 (1-144)||(34489733-34489875)
chr3 (1-144)||(34523197-34523339)
chr3 (1-142)||(34470091-34470231)
chr3 (1-153)||(27630585-27630728)
[»] scaffold0074 (2 HSPs)
scaffold0074 (1-157)||(27687-27842)
scaffold0074 (32-154)||(29508-29629)
[»] chr4 (2 HSPs)
chr4 (1-157)||(10426974-10427129)
chr4 (155-195)||(40422009-40422049)
[»] chr1 (4 HSPs)
chr1 (10-157)||(46190927-46191071)
chr1 (1-106)||(4129859-4129963)
chr1 (163-195)||(622841-622873)
chr1 (161-193)||(35938326-35938358)
[»] chr7 (7 HSPs)
chr7 (1-157)||(2323760-2323915)
chr7 (1-150)||(16184099-16184247)
chr7 (32-144)||(8140457-8140568)
chr7 (160-197)||(16698347-16698384)
chr7 (160-197)||(17672583-17672620)
chr7 (161-195)||(3756377-3756411)
chr7 (150-186)||(41909246-41909282)
[»] chr5 (2 HSPs)
chr5 (161-195)||(9828182-9828216)
chr5 (161-193)||(35446954-35446986)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 1e-98; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 42117524 - 42117323
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  42117524 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcaccatggacatgtgtcttgttaca 42117425  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcatttaggccaattccatgaaaattgctcttctcccatttggttttgctcattcccctttt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42117424 aaagtggctttaccaaacataatattgggtttggatcatcatttagggcaattccatgaaaattgctcttctcccttttggttttgctcattcccctttt 42117325  T
Q  201 ac 202  Q
    ||    
T  42117324 ac 42117323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 30397366 - 30397517
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||||| |||||  ||| ||| || || ||||||||  |||||||||| | ||||||||| || |||||| |||| |||| ||||||  |||| ||||    
T  30397366 tgcaacttgtcaatatatgtaaccattcattttgccactatgcattacat-gcgaaatgcaacttatcttacatgcaccatgaacatgtatcttgctaca 30397464  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcatttaggccaatt 153  Q
    ||||||| |||| ||| || |||||||  |||||||||| |||| ||||||||    
T  30397465 aaagtggttttagcaatcacaatattggatttggatcataatttgggccaatt 30397517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 29191781 - 29191817
Alignment:
Q  157 tgaaaattgctcttctcccatttggttttgctcattc 193  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29191781 tgaaaattgctcttctcccatttgtttttgctcattc 29191817  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 14994749 - 14994783
Alignment:
Q  161 aattgctcttctcccatttggttttgctcattccc 195  Q
    |||||||||||||||||||| ||||||||||||||    
T  14994749 aattgctcttctcccatttgtttttgctcattccc 14994783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 18967733 - 18967578
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||| | |||||||||||||| ||||||||||||||| |||||||||| ||||| ||||| ||||||| | |||| ||||||||||||||||| ||||    
T  18967733 tgcaacatgtcaatgcatgcaaccatccactttgccaccatgcattacat-gagaagtgcaacttgtctttcatgcaccatggacatgtgccttgctaca 18967635  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcatttaggccaattccat 157  Q
    |||||| ||||||||| || ||||||| | |||||||||||||| ||||||||||||    
T  18967634 aaagtgtctttaccaatcacaatattgggcttggatcatcatttgggccaattccat 18967578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23014999 - 23015110
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||||| |||||||||||||||||||  | | |||| |||||| ||||| ||||||| || ||||||||| |||| |||||||| ||  |||||||||    
T  23014999 tgcaacttgtcaatgcatgcaactatcctatataccactttgcataacatt-agaaatgtaacttgtcttacatgcaccatggacacgtttcttgttaca 23015097  T
Q  101 aaagtggctttac 113  Q
     |||||| |||||    
T  23015098 taagtggttttac 23015110  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 7477028 - 7477061
Alignment:
Q  162 attgctcttctcccatttggttttgctcattccc 195  Q
    |||||||||||||||||||||||| |||||||||    
T  7477028 attgctcttctcccatttggttttactcattccc 7477061  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 7477394 - 7477427
Alignment:
Q  162 attgctcttctcccatttggttttgctcattccc 195  Q
    |||||||||||||||||||||||| |||||||||    
T  7477394 attgctcttctcccatttggttttactcattccc 7477427  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 195
Target Start/End: Original strand, 7477760 - 7477793
Alignment:
Q  162 attgctcttctcccatttggttttgctcattccc 195  Q
    |||||||||||||||||||||||| |||||||||    
T  7477760 attgctcttctcccatttggttttactcattccc 7477793  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 7271654 - 7271686
Alignment:
Q  161 aattgctcttctcccatttggttttgctcattc 193  Q
    |||||||||||||||||||| ||||||||||||    
T  7271654 aattgctcttctcccatttgtttttgctcattc 7271686  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 24671487 - 24671642
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||| | |||||||||||||| ||||||||||||||| |||||||||| ||||| ||||| ||||||| | |||| |||||||||||| |||| ||||    
T  24671487 tgcaacatgtcaatgcatgcaaccatccactttgccaccatgcattacat-gagaagtgcaacttgtctttcatgcaccatggacatgtgtcttgctaca 24671585  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcatttaggccaattccat 157  Q
    |||||||||||||||| || ||||||| | |||||||||||||| ||||||||||||    
T  24671586 aaagtggctttaccaatcacaatattgggcttggatcatcatttgggccaattccat 24671642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 4578931 - 4578785
Alignment:
Q  10 tcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttacaaaagtggct 109  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||| ||||| ||||||| | |||| ||| |||||||| |||| |||||||||||||    
T  4578931 tcaatgcatgcaaccatccactttgccaccatgcattacat-gagaagtgcaacttgtctttcatgcaccatcgacatgtgtcttgctacaaaagtggct 4578833  T
Q  110 ttaccaaacataatattgagtttggatcatcatttaggccaattccat 157  Q
    ||||||| || ||||||| | |||||||||||||| |||||| |||||    
T  4578832 ttaccaatcacaatattgggcttggatcatcatttgggccaactccat 4578785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 34489733 - 34489875
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||||| ||||||||||||||| ||||||||||||| || | |||||| || |||||||| ||||||||| |||| |||||||| ||| |||||||||    
T  34489733 tgcaacttgtcaatgcatgcaactgtccactttgccacttttccttacat-gaaaaatgcaacttgtcttacatgcaccatggacacgtgtcttgttaca 34489831  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcattt 144  Q
    ||||||||||||| |   | ||||||| | ||||||||||||||    
T  34489832 aaagtggctttacgagttacaatattgggattggatcatcattt 34489875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 34523197 - 34523339
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||||| ||||||||||||||| ||||||||||||| |||| ||||| ||| |||||||| ||||||||| |||| | |||||| ||| | |||||||    
T  34523197 tgcaacttgtcaatgcatgcaactgtccactttgccactttgccttaca-tgaaaaatgcaacttgtcttacatgcaccttggacaggtgtcctgttaca 34523295  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcattt 144  Q
    |||||||||||||||   | ||||||||| || || ||||||||    
T  34523296 aaagtggctttaccagttacaatattgagcttcgagcatcattt 34523339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34470091 - 34470231
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||||| |||||||| |||||| ||||||||||||| |||| || ||| || |||||| | |||| |||| |||| |||| ||||||| |  ||||||    
T  34470091 tgcaacttgtcaatgcacgcaactgtccactttgccactttgctttgcat-gaaaaatgctacttgtgttacatgcaccatgtacatgtgtcaagttaca 34470189  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcat 142  Q
    |||||||| ||||||| |||||||||| |||| |||||||||    
T  34470190 aaagtggccttaccaatcataatattgggttttgatcatcat 34470231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 27630585 - 27630728
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||||| ||||||||| ||||| |||||||||||        |||||| || |||||||| ||||||||| |||| | |||||||||  |||||||||    
T  27630585 tgcaacttgtcaatgcatacaactgtccactttgcc--------ttacat-gaaaaatgcaacttgtcttacttgcaccttggacatgtatcttgttaca 27630675  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcatttaggccaatt 153  Q
    ||| |||||||||||   | ||||||| | |||||||||||||| ||| ||||    
T  27630676 aaattggctttaccagttacaatattgggcttggatcatcatttgggcaaatt 27630728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 81; Significance: 2e-38; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 27687 - 27842
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||| | |||||||||||||  ||||||||||||||| |||||||||| ||||| ||||| ||||||| | |||| |||||||||||| |||| ||||    
T  27687 tgcaacatgtcaatgcatgcaagcatccactttgccaccatgcattacat-gagaagtgcaacttgtctttcatgcaccatggacatgtgtcttgctaca 27785  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcatttaggccaattccat 157  Q
    |||||||||||||||| || ||||||| | |||||||||||||| ||||||||||||    
T  27786 aaagtggctttaccaatcacaatattgggcttggatcatcatttgggccaattccat 27842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 29508 - 29629
Alignment:
Q  32 ttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttacaaaagtggctttaccaaacataatattgagtt 131  Q
    |||||||| ||||||||||  |||||||||| ||||||||| |||| ||| |||||||| |||| |||||||||||||||||||| |  ||||||| | |    
T  29508 ttgccaccatgcattacata-agaaatgcaacttgtcttacatgcaccatagacatgtgtcttgctacaaaagtggctttaccaatcgcaatattgggct 29606  T
Q  132 tggatcatcatttaggccaattc 154  Q
    ||||||||||||| |||||||||    
T  29607 tggatcatcatttgggccaattc 29629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 10427129 - 10426974
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||| | |||||||||||||| ||||||||||||||| |||||||||| ||||| ||||| ||| ||| | |||| |||| ||||||| |||| ||||    
T  10427129 tgcaacatgtcaatgcatgcaaccatccactttgccaccatgcattacat-gagaagtgcaacttgcctttcatgcaccatgaacatgtgtcttgctaca 10427031  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcatttaggccaattccat 157  Q
    |||||||||||||||| || |||||||  ||||||||||||||| ||||||||||||    
T  10427030 aaagtggctttaccaatcacaatattggatttggatcatcatttgggccaattccat 10426974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 40422049 - 40422009
Alignment:
Q  155 catgaaaattgctcttctcccatttggttttgctcattccc 195  Q
    ||||||||||||||||||||| || | ||||||||||||||    
T  40422049 catgaaaattgctcttctccctttcgtttttgctcattccc 40422009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 46191071 - 46190927
Alignment:
Q  10 tcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttacaaaagtggct 109  Q
    |||||||||||||| ||||||||||||||| |||||||||| ||||| ||||| ||||||| | |||| |||||||||||| |||| |||||||||||||    
T  46191071 tcaatgcatgcaaccatccactttgccaccatgcattacat-gagaagtgcaacttgtctttcatgcaccatggacatgtgtcttgctacaaaagtggct 46190973  T
Q  110 ttaccaaacataatattgagtttggatcatcatttaggccaattccat 157  Q
    ||||||| |  ||||||| | ||| |||||||||| || |||||||||    
T  46190972 ttaccaatc--aatattgggcttgaatcatcatttgggtcaattccat 46190927  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4129963 - 4129859
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||| | |||||||||||||| ||||||||||||||| ||||||||| |||||| ||||| || |||| | |||| |||||||||||| |||| ||||    
T  4129963 tgcaacatgtcaatgcatgcaaccatccactttgccaccatgcattaca-tgagaagtgcaacttttctttcatgcaccatggacatgtgtcttgctaca 4129865  T
Q  101 aaagtg 106  Q
    ||||||    
T  4129864 aaagtg 4129859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 622841 - 622873
Alignment:
Q  163 ttgctcttctcccatttggttttgctcattccc 195  Q
    |||||||||||||||||| ||||||||||||||    
T  622841 ttgctcttctcccatttgtttttgctcattccc 622873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 35938326 - 35938358
Alignment:
Q  161 aattgctcttctcccatttggttttgctcattc 193  Q
    |||||||||||||||||||| ||||||||||||    
T  35938326 aattgctcttctcccatttgtttttgctcattc 35938358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 2323760 - 2323915
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||| | |||||| ||||||| ||||||||||||||| |||||||| |  |||||||||| ||||||||| |||| ||||||||| || |||| ||||    
T  2323760 tgcaacatgtcaatgtatgcaaccatccactttgccaccatgcattacgtc-agaaatgcaacttgtcttacatgcaccatggacatttgtcttgctaca 2323858  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcatttaggccaattccat 157  Q
    ||||||||||||| || || |||| || | ||||||||||| || ||||||||||||    
T  2323859 aaagtggctttactaatcacaatagtgggcttggatcatcacttgggccaattccat 2323915  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 16184099 - 16184247
Alignment:
Q  1 tgcaacttatcaatgcatgcaactatccactttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttaca 100  Q
    |||||| | |||||||||||||| || |||||||||||| ||||||||||  |||| ||||| ||||||| | |||| |||| ||||||| |||| | ||    
T  16184099 tgcaacatgtcaatgcatgcaaccattcactttgccaccatgcattacata-agaagtgcaacttgtctttcatgcaccatgtacatgtgtcttgctgca 16184197  T
Q  101 aaagtggctttaccaaacataatattgagtttggatcatcatttaggcca 150  Q
    ||||||| |||||||| || ||||||| | |||||||||||||| |||||    
T  16184198 aaagtggttttaccaatcacaatattgggcttggatcatcatttgggcca 16184247  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 8140457 - 8140568
Alignment:
Q  32 ttgccaccttgcattacattgagaaatgcaatttgtcttacctgcatcatggacatgtgccttgttacaaaagtggctttaccaaacataatattgagtt 131  Q
    ||||||||||||||||||| ||| ||||||| ||||||| | |||| |||||||||||| |||| |||||||||||||||||||| || ||||||| | |    
T  8140457 ttgccaccttgcattacat-gagtaatgcaacttgtcttgcatgcaccatggacatgtgtcttgctacaaaagtggctttaccaatcacaatattgggat 8140555  T
Q  132 tggatcatcattt 144  Q
    ||||| |||||||    
T  8140556 tggattatcattt 8140568  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 16698347 - 16698384
Alignment:
Q  160 aaattgctcttctcccatttggttttgctcattcccct 197  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  16698347 aaattgctcttctcccatttgtttttgctcattcccct 16698384  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 17672583 - 17672620
Alignment:
Q  160 aaattgctcttctcccatttggttttgctcattcccct 197  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  17672583 aaattgctcttctcccatttgtttttgctcattcccct 17672620  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 3756377 - 3756411
Alignment:
Q  161 aattgctcttctcccatttggttttgctcattccc 195  Q
    |||||||||||||||||||| ||||||||||||||    
T  3756377 aattgctcttctcccatttgtttttgctcattccc 3756411  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 41909246 - 41909282
Alignment:
Q  150 aattccatgaaaattgctcttctcccatttggttttg 186  Q
    |||| |||||||||||||||||||||||||| |||||    
T  41909246 aatttcatgaaaattgctcttctcccatttgtttttg 41909282  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 9828182 - 9828216
Alignment:
Q  161 aattgctcttctcccatttggttttgctcattccc 195  Q
    ||||||||||||||||| |||||||||||||||||    
T  9828182 aattgctcttctcccatctggttttgctcattccc 9828216  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 35446954 - 35446986
Alignment:
Q  161 aattgctcttctcccatttggttttgctcattc 193  Q
    |||||||||||||||||||| ||||||||||||    
T  35446954 aattgctcttctcccatttgtttttgctcattc 35446986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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