View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18692_high_10 (Length: 236)
Name: NF18692_high_10
Description: NF18692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18692_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9872363 - 9872573
Alignment:
| Q |
1 |
actgatatatcaattttaaaaacaaacaaaaatctttattgagaacaactacatttatataccttggttttttatgctgcaagttcgggggctccactag |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9872363 |
actgatatattaattttaaaaacaaacaaaaatctttattgagaacca---------tataccttggttttttatgctgcaagttcgggggctccactag |
9872453 |
T |
|
| Q |
101 |
ccactttagattaaaaacattcacttataaacatatacattaatttatactaattatttatgtatttgtcacattattattaagnnnnnnnncacaagag |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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|
| T |
9872454 |
ccactttagattaaatacattcacttataaacatatacattaatttatactaattatttatgtatttgtcacattattattaag-aaaaaaacataagag |
9872552 |
T |
|
| Q |
201 |
agcaaataaaaacgctctttt |
221 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
9872553 |
agcaaataaaaacgctctttt |
9872573 |
T |
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