View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18692_low_1 (Length: 499)
Name: NF18692_low_1
Description: NF18692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18692_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 50392429 - 50392901
Alignment:
| Q |
1 |
aagcccctttaattctacagtatggaagtcaaactttttcattctcagtatgcttttatcatgtcgttgagttcatatgattgctcattatggacacact |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50392429 |
aagctcctttaattctacagtatggaagtcaaactttttaattctcagtatgcttttatcatgtcgttgagttcatatgattgctcattatggacacact |
50392528 |
T |
|
| Q |
101 |
gctcttttcatattactacttttagttttattcatgcnnnnnnngcaaccttttgtaaatgtgatgttggaggtattcctgatcatcagcagcagttgag |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
50392529 |
gctcttttcatattactacttttaattttattcctgcttttat-gcaaccttttgtaaatgtgatgttggaggtattcct---catcagcagcagttgag |
50392624 |
T |
|
| Q |
201 |
ttaataaattactaattaaattttttgtttatcaaattttgttggtttcaaacacaacttgtatccatgacaatcttgttgactaaaagatatatgtata |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50392625 |
ttaataaattactaattaaattttttatttatcaaattttgttggtttcaaacacaacttgtatccatgacaatcttgttgactaaaagatatatgtata |
50392724 |
T |
|
| Q |
301 |
agagatagaactcatgattaatttatcctattgtttgctgactcatcaaaataaaagaaattgatagcaattttaatttctgtctccatctctctctatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50392725 |
agagatagaactcatgattaatttatcctattgtttgctgactcatcaaaataaaagaaattgatagcaattttaatttctgtctccatctctctctatt |
50392824 |
T |
|
| Q |
401 |
taattgaacatacctcatttataacagcagttcacagctgcagagctactgctaaaactaaaactaagtagtaagca |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50392825 |
taattgaacatacctcatttataacagcagttcacagctgcagagctactgctaaaactaaaactaagtagtaagca |
50392901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University