View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18692_low_2 (Length: 388)
Name: NF18692_low_2
Description: NF18692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18692_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 29816542 - 29816906
Alignment:
| Q |
10 |
ttatactcattattatctcaaaatgcaaaatgtttatgttccacttctgcatctagagttactgggaggagctagtagcctcagattattcaacagtaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29816542 |
ttatactcattattatctcaaaatgcaaaatgtttatgttccacttctgcatctagagttactgggaggagctagtagcctcagattattcaacagtaat |
29816641 |
T |
|
| Q |
110 |
tagttcctaatcactaatgaatattatcaccatatctactacttctaagtagcctttcttgtttcgtgtg--tatatatatagaaaaatgtacatcattt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29816642 |
tagttcctaatcactaatgaatattatcaccatatctactacttctaagtagcctttcttgtttcgtgtgtatatatatatagaaaaatgtacatcattt |
29816741 |
T |
|
| Q |
208 |
tatcagaaaataaaatctgagaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaatatagatggaatattagaagaacagggttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29816742 |
tatcagaaaataaaatctgagaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaatatagatggaatattagaagaacagggttt |
29816841 |
T |
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| Q |
308 |
atgaatttatacatagatcnnnnnnntcttgtacatcaaattcgaattgaaaccacactaagtat |
372 |
Q |
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| T |
29816842 |
atgaatttatacatagatcaaaaaaatcttgtacatcaaattcgaattgaaaccacactaagtat |
29816906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 133 - 371
Target Start/End: Original strand, 29824982 - 29825216
Alignment:
| Q |
133 |
ttatcaccatatctactacttctaagtagcctttcttgtttcgtgtgtatatatatagaaaaatgtacatcattttatcagaaaataaaatctgagaggc |
232 |
Q |
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| T |
29824982 |
ttatcaccatagctactgcttctaagtagcctttcttgattctt------atatatagaaagatgtacatgattttatcataaaataaaatctgagaggc |
29825075 |
T |
|
| Q |
233 |
accaaagaaaagtaaaaaggagttcatctcaaatttatctataaatatagatggaatattaga--agaacagggtttatgaatttatacatagatcnnnn |
330 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||| |||||| |
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| T |
29825076 |
accaaagaaaattaaaaaggagttcatctcaaatttatctataaatatagatggaatattagatgataacaggatttataaatttatagatagattcaaa |
29825175 |
T |
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| Q |
331 |
nnntcttgtacatcaaattcgaattgaaaccacactaagta |
371 |
Q |
| |
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|||| |||||||| | ||||||||||||||||||||| |
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| T |
29825176 |
caatcttatacatcaagtatgaattgaaaccacactaagta |
29825216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 37570026 - 37570077
Alignment:
| Q |
227 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
278 |
Q |
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|||| ||||||||||| ||| | | ||||||||||||||||||||||||||| |
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| T |
37570026 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
37570077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 21262274 - 21262223
Alignment:
| Q |
227 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
278 |
Q |
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| T |
21262274 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
21262223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 37503087 - 37503036
Alignment:
| Q |
227 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
278 |
Q |
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|||| ||||||||||| ||| | | ||||||||||||||||||||||||||| |
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| T |
37503087 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
37503036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 8408249 - 8408300
Alignment:
| Q |
227 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
278 |
Q |
| |
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|||| ||||||||||| ||| | | ||||||||||||||||||||||||||| |
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| T |
8408249 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
8408300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 32041456 - 32041507
Alignment:
| Q |
227 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
278 |
Q |
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|||| ||||||||||| ||| | | ||||||||||||||||||||||||||| |
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| T |
32041456 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
32041507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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