View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18692_low_3 (Length: 369)
Name: NF18692_low_3
Description: NF18692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18692_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 354
Target Start/End: Complemental strand, 38981300 - 38980966
Alignment:
| Q |
13 |
aatattaactaacattttaactacctcgtacacatattaacatcatcatgaatgaaagcaaagtgatgtacctccaaccctttttccttgaaaattggtg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38981300 |
aatattaactaacattttaactacctcgtacacatattaacatcatcatgaatgaaagcaaagtgatgtacctccaaccctttttcattgaaaattggtg |
38981201 |
T |
|
| Q |
113 |
ccaagtattcataatattaaaattgaaagctagaaggctaaattggcgtcgaagtaaaatgttgtggcgaaaaaggcaaagcaatgacatatatcaaaat |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38981200 |
ccaagtattcataatattaaaattgaaagctagaaggctaaattggcgtcgaagtaaaatgttgtggcgaaaaaggcaaagca-------atatcaaaat |
38981108 |
T |
|
| Q |
213 |
ggaggaactgcctggaagattcgatagagcttcatatgaccttccaattcaattacaacttcccgaagttgatcttcaacacttttcaatttgatttgat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38981107 |
ggaggaactgcctggaagattcgatagagcttcatatgaccttccaattcaattacaacttcccgaagttgatcttcaacacttttcaatttgatttgat |
38981008 |
T |
|
| Q |
313 |
catcagcgaggcgatggaaaattgatttaacttctttgttta |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38981007 |
catcagcgaggcgatggaaaattgatttaacttctttgttta |
38980966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 39909701 - 39909903
Alignment:
| Q |
16 |
attaactaacattttaactacctcgtacacatattaacatcatcatgaatgaaagcaaagtgatgtacctccaaccctttttccttgaa-----aattgg |
110 |
Q |
| |
|
|||||| |||||||||| | || ||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
39909701 |
attaaccaacattttaattgcccggtacacatacgaacattgtcatgaatgaaagcaaagtgatatacctccaacccttttttagtgaactgaaaattgg |
39909800 |
T |
|
| Q |
111 |
tgccaagtattcataatattaaaattgaaagctagaaggctaaattggcgtcgaagtaaaatgttgtggcgaaaaaggcaaagcaatgacatatatcaaa |
210 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||| |
|
|
| T |
39909801 |
tgccaagtgttcataatattaaagtagaaagctataaggctaaattggcgtcgaagtaaaatgttatggccaaaaaggcaaagcaacaacataaatcaaa |
39909900 |
T |
|
| Q |
211 |
atg |
213 |
Q |
| |
|
||| |
|
|
| T |
39909901 |
atg |
39909903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 281 - 352
Target Start/End: Original strand, 39909926 - 39909997
Alignment:
| Q |
281 |
ttgatcttcaacacttttcaatttgatttgatcatcagcgaggcgatggaaaattgatttaacttctttgtt |
352 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39909926 |
ttgatcttcaacactttccaatttgatttgatcatcagagaggcgatggaaaattgatttaacttctttgtt |
39909997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 39863108 - 39863176
Alignment:
| Q |
284 |
atcttcaacacttttcaatttgatttgatcatcagcgaggcgatggaaaattgatttaacttctttgtt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39863108 |
atcttcaacacttttcaatttgatttgatcattagcaaggcgatggaaaattgatttaacttctttgtt |
39863176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 39855909 - 39855977
Alignment:
| Q |
284 |
atcttcaacacttttcaatttgatttgatcatcagcgaggcgatggaaaattgatttaacttctttgtt |
352 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39855909 |
atcttcaacgctcttcaacttgatttgatcatcagcgaggcgatggaaaattgatttaacttcattgtt |
39855977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 349
Target Start/End: Complemental strand, 39738283 - 39738101
Alignment:
| Q |
168 |
aaaatgttgtggcgaaaaaggcaaagcaatgacatatatcaaaatggaggaactgcctggaagattcgatagagcttcatatgaccttccaattcaatta |
267 |
Q |
| |
|
|||||||||||| |||||||| || ||| ||||| ||||||||||||| | | || ||||||| || |||||||| || ||||||||||||| | |
|
|
| T |
39738283 |
aaaatgttgtggtaaaaaaggctaaccaaatacataaatcaaaatggagggattttcttgaagatttgaaagagcttctcataaccttccaattcagatt |
39738184 |
T |
|
| Q |
268 |
caacttcccgaagttgatcttc-aacacttttcaatttgatttgatcatcagcgaggcgatggaaaattgatttaacttcttt |
349 |
Q |
| |
|
| |||| ||| ||||||||| |||||||||||| ||||||||||||||| ||||| | ||||||||||| ||||| ||||| |
|
|
| T |
39738183 |
gagtttccggaatttgatcttccaacacttttcaacttgatttgatcatcaacgaggtgctggaaaattgacttaacatcttt |
39738101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 295 - 352
Target Start/End: Original strand, 39846202 - 39846259
Alignment:
| Q |
295 |
ttttcaatttgatttgatcatcagcgaggcgatggaaaattgatttaacttctttgtt |
352 |
Q |
| |
|
||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39846202 |
ttttcaacttgacttgatcaatagcgaggcgatggaaaattgatttaacttctttgtt |
39846259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 29451986 - 29452060
Alignment:
| Q |
113 |
ccaagtattcataatat-taaaattgaaagctagaaggctaaattggcgtcgaagtaaaatgttgtggcgaaaaa |
186 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| || |||||||||| | |||||||||||||||||| ||||| |
|
|
| T |
29451986 |
ccaagtattcataatatataaaatagaaagctagcagtctaaattggcattgaagtaaaatgttgtggccaaaaa |
29452060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University