View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18692_low_5 (Length: 318)
Name: NF18692_low_5
Description: NF18692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18692_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 1531122 - 1531395
Alignment:
| Q |
14 |
cattttaaaatagaaagcttaccactttgcgacatattgatatccaatgtgatgtacaagaaggacacgatgcaaagagttatcgcataattgcagtgcg |
113 |
Q |
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| T |
1531122 |
cattttaaaatagaaagcttaccactttgcgacatattgatatccaatgtgatgtacaagaaggacacgatgcaaatagttatcgcataattgcagtgcg |
1531221 |
T |
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| Q |
114 |
tacaaagctaccaattctgcacaaatgaaagaagtaggaaataagcttcataatcgtgaaagacaaatggcgattactatttttggccaatatctaattt |
213 |
Q |
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| T |
1531222 |
tacaaagctaccaattctgcacaaatgaaagaagtaggaaataagcttcataatcgtgaaagacaaatggcaattactattgttggccaatatctaattt |
1531321 |
T |
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| Q |
214 |
tttaataaaatataaatgataactatggtcgaccatagctaaaattttgaaacaacaacaaccaagcctaatcc |
287 |
Q |
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| T |
1531322 |
tttaataaaatataaatgataactatggtcgaccatagctaaaattttgaaacaacaacaaccaagcctaatcc |
1531395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 1012628 - 1012472
Alignment:
| Q |
14 |
cattttaaaatagaaagcttaccactttgcgacatattgatatccaatgtgatgtacaagaaggacacgatgcaaagagttatcgcataattgcagtgcg |
113 |
Q |
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| T |
1012628 |
cattttataatagaaagcttaccactttgcgacatactgatatccaatgtgatgtgcaagaatgacatgatgcatagagtaatcgcataattgtggttcg |
1012529 |
T |
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| Q |
114 |
tacaaagctaccaattctgcacaaatgaaagaagtaggaaataagcttcataatcgt |
170 |
Q |
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| T |
1012528 |
tactaagttaccaattctgcacaaatgaaagaagtaagaaataagcttcataatcgt |
1012472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 165 - 287
Target Start/End: Complemental strand, 1011428 - 1011306
Alignment:
| Q |
165 |
aatcgtgaaagacaaatggcgattactatttttggccaatatctaattttttaataaaatataaatgataactatggtcgaccatagctaaaattttgaa |
264 |
Q |
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| T |
1011428 |
aatcgtaaaagacaaatggcaattactattattggccaatatctaattttttaataaaatataactgataactatggttgaccatagctaaaattttgaa |
1011329 |
T |
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| Q |
265 |
acaacaacaaccaagcctaatcc |
287 |
Q |
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| T |
1011328 |
acaacaacaaccaagccttatcc |
1011306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 318
Target Start/End: Complemental strand, 32339842 - 32339788
Alignment:
| Q |
264 |
aacaacaacaaccaagcctaatccgcctaagcagaatagcctacatggatcaaac |
318 |
Q |
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| T |
32339842 |
aacaacaacaaccaagccttatcccactaagtagaatagactacatggatcaaac |
32339788 |
T |
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