View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18692_low_6 (Length: 278)
Name: NF18692_low_6
Description: NF18692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18692_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 44691772 - 44691504
Alignment:
| Q |
5 |
gtgattgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaatt |
104 |
Q |
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| T |
44691772 |
gtgattgataagcatggaatggcatgaagatttggtataattgaagttttagaaagtaacaaaccagcctttgtcttggtctcacatttgatatccaatt |
44691673 |
T |
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| Q |
105 |
gttgtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaacc |
204 |
Q |
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| T |
44691672 |
gttgaacccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggatgaagcaccttttcaaatttcccaaaacc |
44691573 |
T |
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| Q |
205 |
ttctttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
273 |
Q |
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| T |
44691572 |
ttctttcatagccacttgagattgatcaacttgcacgcaacacacaatattccccattttcttttcact |
44691504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 44682091 - 44681830
Alignment:
| Q |
8 |
attgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgtt |
107 |
Q |
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| T |
44682091 |
attgataagcatggaatgacatgaagatttggtttaattgatgtttgagacagtaacaaac----ctttgtctttgtctcacacttgatatccaattgtt |
44681996 |
T |
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| Q |
108 |
gtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttc |
207 |
Q |
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| T |
44681995 |
gtacccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaaaccttc |
44681896 |
T |
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| Q |
208 |
tttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
273 |
Q |
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| T |
44681895 |
tttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcact |
44681830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 44653077 - 44652816
Alignment:
| Q |
8 |
attgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgtt |
107 |
Q |
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|||| |||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44653077 |
attggtaagcatggaatgacatgaacacttggtttaattgatgtttgagaccgtaac----gaacctttgtcttggtctcacatttgatatccaattgtt |
44652982 |
T |
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| Q |
108 |
gtagccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttc |
207 |
Q |
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| T |
44652981 |
gtacccgaagagagagatgaccagcaattctttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaattttccaaaaccttc |
44652882 |
T |
|
| Q |
208 |
tttcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttcttctcact |
273 |
Q |
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| T |
44652881 |
tttcatagccacttgagattgatcaacttgcacacaacacacaagattccccattttcttttcact |
44652816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 44637251 - 44637508
Alignment:
| Q |
10 |
tgataagcatggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgt |
109 |
Q |
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|||||| ||||||||||| ||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
44637251 |
tgataatcatggaatgacgtgaagatttcgttaaattgaagttttagacagtaacaaacgaacctttgtcttggtctcacattttatatccaattgctgt |
44637350 |
T |
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| Q |
110 |
agccgaagagagagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctt |
209 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |||| |
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| T |
44637351 |
agccgaagagagagatgaccagcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccctctt |
44637450 |
T |
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| Q |
210 |
tcatagccacttgagattgatcaacttgcacgcaacacacaagattccccattttctt |
267 |
Q |
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| T |
44637451 |
tcatagccactgtagattgatcaacttgcacacaacacaaaagattccccattttctt |
44637508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 44631578 - 44631338
Alignment:
| Q |
20 |
ggaatgacatgaagatttggtttaattgaagtttgagacagtaacaaacgaacctttgtcttggtctcacatttgatatccaattgttgtagccgaagag |
119 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
44631578 |
ggaatgacatgaagatttggttgaattaaagtttgagacagtaacaaa---acctttgtcttggtctcacattttatatccaattgttgtagccgaaggg |
44631482 |
T |
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| Q |
120 |
agagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcccggctgaagcaccttttcaaatttcccaaaaccttctttcatagccac |
219 |
Q |
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| T |
44631481 |
agagatgaccggcaattcgttttccaaggaaccatggcatgcaatggcatcctggctgaagcacctcttcaaattttccaaaaccttctctcatagccac |
44631382 |
T |
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| Q |
220 |
ttgagattgatcaacttgcacgcaacacacaagattccccattt |
263 |
Q |
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| T |
44631381 |
cgtagactgatcaacttgcacgcaacacaaaagattccccattt |
44631338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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