View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_high_22 (Length: 337)
Name: NF18693_high_22
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 23589508 - 23589729
Alignment:
| Q |
16 |
atttaaagagatggaaatataagtgtttgtaataagtttatttgtattggtagataaaataagcatagaaacagaacaggtttaccaaggtttgaaaatg |
115 |
Q |
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| T |
23589508 |
atttaaagagatggaaatataagtgtttgtaataagtttatttgtgttggtagataaaataagcatagaaacagaaca------ccaaggtttggcaatg |
23589601 |
T |
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| Q |
116 |
gtttaaaattaagtttgtaatcaattagtatacagatagaaacgaaaccatcaaagagagggtcttttactctatctacagccatctgttttacacatgc |
215 |
Q |
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| T |
23589602 |
gtttaaaattaagtttgtaattaattagta--caaatagaaacgaaaccattaaagagagggtctttcactctatctacagccatttgttttacacatgc |
23589699 |
T |
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| Q |
216 |
ttcaattccctttacccctcaaaagcttgtc |
246 |
Q |
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|||||||||| |||||||||||||||||||| |
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| T |
23589700 |
ttcaattccc-ttacccctcaaaagcttgtc |
23589729 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 40898738 - 40898706
Alignment:
| Q |
180 |
ttttactctatctacagccatctgttttacaca |
212 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
40898738 |
ttttactctatctacagccatctgtttcacaca |
40898706 |
T |
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