View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18693_high_3 (Length: 569)
Name: NF18693_high_3
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 402
Target Start/End: Complemental strand, 30655335 - 30654943
Alignment:
| Q |
16 |
ataacaataataccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcaacaaaaaatccaccttta |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
30655335 |
ataacaataacaccaattgatgtacgattatgcctccctttcctcaacaccctcaacctatatgatcaacacccataactcagcaaaaactccaccttta |
30655236 |
T |
|
| Q |
116 |
aaaccccttaagagctaataccacccaaaagatgcaaccaccaca------cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30655235 |
aaaccccttaagagctaataccacccaaaagatgcaaccaccactaccacgcccaagcaaacacctataacacttcaccaccactctttcaagccaccgt |
30655136 |
T |
|
| Q |
210 |
aacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaacagatccnnnnnnncgtatatcagcacctct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||||| |
|
|
| T |
30655135 |
aacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcccaagaccatccaccaaaaaagatccaaaaaaacgtatattaacacctct |
30655036 |
T |
|
| Q |
310 |
attcctgttcccatcccttttacaaaacactaccaccaacaaaagcccctgagcattgtcggagacgtgaaaccacggcggtgccattccagc |
402 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30655035 |
gttcctcttcccatcccttttacaaaacactaccaccaacaacagcccctgagcattgtcggagacgtgaaaccacggcggtgccattccagc |
30654943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 465 - 551
Target Start/End: Complemental strand, 30654877 - 30654791
Alignment:
| Q |
465 |
cgaccaccgcggcgatgcctacagtggttttgaggactttctacgaacccacttaaattgtgcatgagctttaccgaagcagaagct |
551 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30654877 |
cgaccaccgcggcgatgccgactatggttttgaggactttctatgaacccacttaaaccgtgcatgagctttaccgaagcagaagct |
30654791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 161 - 396
Target Start/End: Complemental strand, 38929003 - 38928769
Alignment:
| Q |
161 |
cccaagcaaacacctataacacttcaccaccgctctttcaagccaccgtaacaaccccaaaacaccatacaaaacaccacatcaacacccataggtctcc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
38929003 |
cccaagcaaacacctataacacttcaccatcgctctttcaagccaccataacaaccccaaaacaccgtacaaaacctcacatcaacacccataagtctcc |
38928904 |
T |
|
| Q |
261 |
caagaccatccaccaaaacagatccnnnnnnncgtatatcagcacctctattcctgttcccatcccttttacaaaacactaccaccaacaaaagcccctg |
360 |
Q |
| |
|
||||||| |||||||||||| |||| || ||| || ||||| | ||||| ||||||||| ||||||||||||||||| | | |||||||| | | |
|
|
| T |
38928903 |
caagaccctccaccaaaacaaatcc-aaaaaacgaatagcaacacctatgttcctcttcccatcctttttacaaaacactacccctagcaaaagccacag |
38928805 |
T |
|
| Q |
361 |
agcattgtcggagacgtgaaaccacggcggtgccat |
396 |
Q |
| |
|
| |||||||||| ||| |||||||||||||||||| |
|
|
| T |
38928804 |
accattgtcggacacgctaaaccacggcggtgccat |
38928769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University