View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_high_45 (Length: 219)
Name: NF18693_high_45
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_high_45 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 38362519 - 38362698
Alignment:
| Q |
18 |
atgatggaatcattatttcttagaaaaagtacgcaagtgatagtttgaagaagttcaggatagagcatgcaaagctgattttcaagtcatttgaaatatt |
117 |
Q |
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| T |
38362519 |
atgatggaatcatcatttcttagaaaaagtacgcaagtaatattttgaagaagttcaggatagagcatgcaaagctgattttcaagtcatttgaaatatt |
38362618 |
T |
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| Q |
118 |
tggatggaatatgaatgaatagtttgtgctcatatagtattgtgtttgtgtgatatggtcagtagtccaattttggtaacagt |
200 |
Q |
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| T |
38362619 |
tggatggaatatgaatgaatagtttgtgctcatatag---tgtgtctgtgtgatatggtcagtagtccaattttggtaacagt |
38362698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 42303396 - 42303468
Alignment:
| Q |
20 |
gatggaatcattatttcttagaaaaagtacgcaagtgatagtttgaagaagttcaggatagagcatgcaaagc |
92 |
Q |
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| T |
42303396 |
gatggaatctttatttctcaaaagaagtatgcaagtgatattttgaagaagttcaagatggagcattcaaagc |
42303468 |
T |
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