View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_high_7 (Length: 466)
Name: NF18693_high_7
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 23570955 - 23571184
Alignment:
| Q |
6 |
agtgagatgaaagataaggggctaccaatgtttgtttccatttcctctccaaaagannnnnnnnnngtttccattgattaccaaggttagtctcattttc |
105 |
Q |
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| T |
23570955 |
agtgaaatgaaagataaggggctaccaatgtttgtttccatttcctctccaaaatattttttttt-gtttccattgattaccaaggttagtctcattttc |
23571053 |
T |
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| Q |
106 |
attttccgttaaaaatgttagtggcaagaagaatataaacataccagttgcattcgaaacaatgcctatagaggatactggtacccaacaaaacactaac |
205 |
Q |
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| T |
23571054 |
attttccgttaaaaatgttagtggcaagaagaatataaacataccagttgcattcgaaacaatgcctatagaggatactggtacccaacaaaacactaac |
23571153 |
T |
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| Q |
206 |
tacaaataagtgacaggaaaattataagtcg |
236 |
Q |
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| T |
23571154 |
tacaaataagtgacaggaaaattataagtcg |
23571184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 296 - 450
Target Start/End: Original strand, 23571244 - 23571398
Alignment:
| Q |
296 |
gaacgacgattgattaaatgtacaaagtttacaaaataagtaaatctatgagaaatgctctgttaagagcaatactttaacgataatcgaggaaagatgt |
395 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23571244 |
gaacgacaattgattaaatgtacaaagtttacaaaataagtaaatctatgagaaatgctctgttaagagcaatactttaacgataatcgaggaaagatgt |
23571343 |
T |
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| Q |
396 |
tgaatggcttaatctacccacaattcaacatctgtcacaaatctaatattatact |
450 |
Q |
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| T |
23571344 |
tgaatggcttaatctacccacaattcaacatctgtcacaaatctaatattatact |
23571398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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