View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_1 (Length: 786)
Name: NF18693_low_1
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_1 |
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| [»] scaffold0160 (2 HSPs) |
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Alignment Details
Target: scaffold0160 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 236 - 691
Target Start/End: Complemental strand, 19874 - 19419
Alignment:
| Q |
236 |
ctttggaagatagtgatgaatctcaagagctactaaaagtatgcaagaataataataaagtacgtaaaggaaggtacaaatgtgaaacatgtaataaagt |
335 |
Q |
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| T |
19874 |
ctttggaagatagtgatgaatctcaagagctactaaaagtatgcaagaataataataaagtacgtaaaggaaggtacaaatgtgaaacatgtaataaagt |
19775 |
T |
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| Q |
336 |
gttcaaatcgtatcaagcattgggtggtcatagagcaagtcacaagaagattaaaccaaacataacggtggaagaatcgtcaccagaattcgaaattgtt |
435 |
Q |
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| T |
19774 |
gttcaaatcgtatcaagcattgggtggtcatagagcaagtcacaagaagattaaaccgaacataacggtggaagaatcgtcaccagaattcgaaattgtt |
19675 |
T |
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| Q |
436 |
gaaaagaaagttcatgaatgtccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacatgtgattcatggatcatcat |
535 |
Q |
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| T |
19674 |
gaaaagaaagttcatgaatgtccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacatgtgattcatggatcatcat |
19575 |
T |
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| Q |
536 |
caacaacagttccaattttcagctcaaaaagagttacaaaaagtgttatagatcttaaccttcctgctccaattgatgatgatgaagttagtcaaattga |
635 |
Q |
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| T |
19574 |
caacaacagttccaattttcagctcaaaaagagttacaaaaagtgttatagatcttaaccttcctgctccaattgatgatgatgaagttagtcaaattga |
19475 |
T |
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| Q |
636 |
aaattctgctgtttctgatgcagaatttctcaaaactcgttaagcatcatggatgg |
691 |
Q |
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| T |
19474 |
aaattctgctgtttctgatgcagaatttctcaaaactcgttaagcatcatggatgg |
19419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 20105 - 19956
Alignment:
| Q |
8 |
cgaagaatatgaaattttttaataagaatgattcttcggttgttgaacatgaacctgttagttcggtttctgatgcaacaaccgaagaagatgttgcatt |
107 |
Q |
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| T |
20105 |
cgaagaaaatgaaattttttaacaagaatgattcttcggttgttgaacatgaacctgttagttcggtttctgatgcaacaaccgaagaagatgttgcatt |
20006 |
T |
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| Q |
108 |
ttgtctaatgcagttgtcgagagacaaatggaatagacaaaatgaacaat |
157 |
Q |
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| T |
20005 |
ttgtctaatgcagttgtcgagagacaaatggaatagacaaaatgaacaat |
19956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 435 - 516
Target Start/End: Complemental strand, 9546059 - 9545978
Alignment:
| Q |
435 |
tgaaaagaaagttcatgaatgtccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacat |
516 |
Q |
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| T |
9546059 |
tgaaaagaaaattcatgaatgtccaatttgttttagagaatttgcttcaggtcaagcactaggtggacataggagaacacat |
9545978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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