View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18693_low_10 (Length: 457)
Name: NF18693_low_10
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 252 - 426
Target Start/End: Complemental strand, 23033923 - 23033749
Alignment:
| Q |
252 |
tttgtcattaagagttaattagatatataaggaaattacccaatgcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23033923 |
tttgtcattaagagttaattagatatataaggaaattacccaatgcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttat |
23033824 |
T |
|
| Q |
352 |
ccttgaagctgcttaactttgtttcacccatttttctaccttatgaaggtctttgattttgtttgtaaagtaagc |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23033823 |
ccttgaagctgcttaactttgtttcacccatttttctaccttatgaaggtctttgattttgtttgtaaagtaagc |
23033749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 23025859 - 23025750
Alignment:
| Q |
278 |
ataaggaaattacccaatgcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttatccttgaagctgcttaactttgtttca |
377 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23025859 |
ataagaaaattacccaatgcctcgggttccacctgtcactaacgcagtcataccatgtagtgaccatcttttatccttgaagctgcttaactttgtttca |
23025760 |
T |
|
| Q |
378 |
cccatttttc |
387 |
Q |
| |
|
||||| |||| |
|
|
| T |
23025759 |
cccatgtttc |
23025750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 23034076 - 23034030
Alignment:
| Q |
112 |
gatcgtacaaatatcatttgtcatatagaaaccacaattatttacat |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23034076 |
gatcgtacaaatatcatttgtcatatagaaaccacaattatttacat |
23034030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 23080262 - 23080175
Alignment:
| Q |
289 |
acccaatgcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttatccttgaagctgcttaactttgtttc |
376 |
Q |
| |
|
|||| |||||||| |||||||| || |||| || ||||| || || ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
23080262 |
accctatgcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatctttgaagctgcttaactttgtttc |
23080175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 376
Target Start/End: Complemental strand, 23091162 - 23091082
Alignment:
| Q |
296 |
gcctcgggttccacctgttactaacgcagtcataccatgcagtgaccatcttttatccttgaagctgcttaactttgtttc |
376 |
Q |
| |
|
|||||| |||||||| || |||| || ||||| || || ||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
23091162 |
gcctcgtgttccaccagtcactagagctgtcattccttggagtgaccatctttgatctttgaagctgcttaactttgtttc |
23091082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University