View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18693_low_11 (Length: 456)

Name: NF18693_low_11
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18693_low_11
NF18693_low_11
[»] chr3 (1 HSPs)
chr3 (1-456)||(40675280-40675735)


Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 40675280 - 40675735
Alignment:
Q  1 tgcagcaaccatgaacattaaggtgacattgcacattttccggtgattagagacatgtagttagaaaacaattaattaagtaattaaaaataaagatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675280 tgcagcaaccatgaacattaaggtgacattgcacattttccggtgatttgagacatgtagttagaaaacaattaattaagtaattaaaaataaagatgaa 40675379  T
Q  101 tagagagttacaacaatttgctttatcatcttcatctcatttttatagccgttttccaaaatcattctctttacgtaggaaagtgccatggtggtaccaa 200  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40675380 tagagagttacaacaatttgcagtatcatcttcatctcatttttatagccgttttccaaaatcattctctttacgtaagaaagtgccatggtggtaccaa 40675479  T
Q  201 atactccatccacgttcaccatttgtggcaaaatggaacgtaacattcctctatgcttgtctctttgctttgtttttagaccctctttatttctatattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675480 atactccatccacgttcaccatttgtggcaaaatggaacgtaacattcctctatgcttgtctctttgctttgtttttagaccctctttatttctatattc 40675579  T
Q  301 ctattacaggagacaaagcgtgcatggaaacagatttggttcttggtttgttagtcacgttctcgcgaaccgtcgcagatctcttcttcttgtttcacat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675580 ctattacaggagacaaagcgtgcatggaaacagatttggttcttggtttgttagtcacgttctcgcgaaccgtcgcagatctcttcttcttgtttcacat 40675679  T
Q  401 gattcttaagttcagaactgccttcaattctcctacctctttcgtttatggtcgca 456  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40675680 aattcttaagttcagaactgccttcaattctcctacctctttcgtttatggtcgca 40675735  T

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