View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_12 (Length: 442)
Name: NF18693_low_12
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 19749270 - 19749680
Alignment:
| Q |
11 |
gaagaaaatagaatatggaatgttacctttctgttgtctagacactaaatcctgaccaaaggaaaataaaataggcacagtcattcatagatcttgatca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19749270 |
gaagaaaatagaatatggaatgttacctttctgttgtctagacactaaatcctgaccaaaggaaaataaaataggcacagtcattcatagatcttgatca |
19749369 |
T |
|
| Q |
111 |
agaagaaacaacttgtacattaccacattcaagaagggaagttttacagcaccttttagcttccttaaggaaatcaacttaacgaacaacctcactgctc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19749370 |
agaagaaacaacttgtacattaccacattcaagaagggaagttttacagcaccttttagcttcctcaaggaaatcaacttaacgaacaacctcactgctc |
19749469 |
T |
|
| Q |
211 |
caactcctaaatcattttccgtatttcccaagaacaagaccaaaacctatatgggtacattttgaatacgcgttctcattctgtggaagccaacctgaac |
310 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19749470 |
caactcctaaatcattttccgtatttcccaagaacaagaccaaaacctatatgggtacattttgaatacgcgttctcattccgtggaagccaacctgaac |
19749569 |
T |
|
| Q |
311 |
gcttaaaggcctgaaggaaaatcaaaagggataactattatttaagggttatatcagcaaaacctatagaagttgataacaacttatcaaggacaactca |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19749570 |
gcttaaaggcctgaaggaaaatcaaaagggataactattatttaagggttatatcagcaaaacctatagaagttgataacaacttatcaaggacaactca |
19749669 |
T |
|
| Q |
411 |
gaacagggtaa |
421 |
Q |
| |
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||||||||||| |
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| T |
19749670 |
gaacagggtaa |
19749680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 34032135 - 34031810
Alignment:
| Q |
11 |
gaagaaaatagaatatggaatgttacctttctgttgtctagacactaaatcctgaccaaaggaaaataaaataggcacagtcattcatagatcttgatca |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34032135 |
gaagaatatagaatatggaatgttacctttccgatgtctagacactaaaatctcaccaaaggaaaataaaataggcacagtcattcgtagatcttgatca |
34032036 |
T |
|
| Q |
111 |
agaagaaacaacttgtacattaccacattcaagaagggaagttttacagcaccttttagcttccttaaggaaatcaacttaacgaacaacctcactgctc |
210 |
Q |
| |
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|| ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| | ||| |||||||| |||||||||||||||||||| |
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| T |
34032035 |
agcagaaacaacttgtacattaccacgttcaagaagggcagttttacagcgccttttagcttcatcaagcaaatcaaccaaacgaacaacctcactgctc |
34031936 |
T |
|
| Q |
211 |
caactcctaaatcattttccgtatttcccaagaacaagaccaaaacctatatgggtacattttgaatacgcgttctcattctgtggaagccaacctgaac |
310 |
Q |
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| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || |
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| T |
34031935 |
cgactcctaaatcgttttccgtcattcccaagaacaagaccaaaacctatatgggtacattttggatacgcgttctcattccgtggaagccaacctgcac |
34031836 |
T |
|
| Q |
311 |
gcttaaaggcctgaaggaaaatcaaa |
336 |
Q |
| |
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|| |||||||||||| |||||||||| |
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|
| T |
34031835 |
gcctaaaggcctgaaagaaaatcaaa |
34031810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 34031692 - 34031638
Alignment:
| Q |
340 |
gataactattatttaagggttatatcagcaaaacctatagaagttgataacaact |
394 |
Q |
| |
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|||||||||||| ||||||| |||||||||||||| | ||||||||||||||||| |
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|
| T |
34031692 |
gataactattatataagggtgatatcagcaaaacccaaagaagttgataacaact |
34031638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 260
Target Start/End: Complemental strand, 51569112 - 51568971
Alignment:
| Q |
119 |
caacttgtacattaccacattcaagaagggaagttttacagcaccttttagcttccttaaggaaatcaacttaacgaacaacctcactgctccaactcct |
218 |
Q |
| |
|
||||| |||| ||||||| ||||||||| | | |||||||| |||||||||||| | ||| ||||||||| | |||||| ||| || || | ||||| |
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| T |
51569112 |
caactggtactttaccacgttcaagaagagcaactttacagcgccttttagcttcatcaagtaaatcaactaatcgaacagtctcgctactgcgactccg |
51569013 |
T |
|
| Q |
219 |
aaatcattttccgtatttcccaagaacaagaccaaaacctat |
260 |
Q |
| |
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||||| |||||| | | ||||||||||||||||||||||| |
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|
| T |
51569012 |
aaatcgttttccatcatcgccaagaacaagaccaaaacctat |
51568971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 341
Target Start/End: Original strand, 47973816 - 47974033
Alignment:
| Q |
125 |
gtacattaccacattcaagaagggaagttttacagcaccttttagcttccttaaggaaatcaacttaacgaacaacctcactgctccaactcctaaatca |
224 |
Q |
| |
|
|||| ||||||| ||||||||| | | |||||||| |||||||||||| | ||| |||||||| | |||||| ||| ||||| | ||| | ||||| |
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| T |
47973816 |
gtactttaccacgttcaagaagagcaactttacagcgccttttagcttcatcaagtaaatcaaccaatcgaacagtctcgctgctgcgacttcgaaatcg |
47973915 |
T |
|
| Q |
225 |
ttttccgtatttcccaagaacaagaccaaaacctatatgggtacattttgaatacgcgttctcattctgtggaagccaacctgaacgcttaaaggcctga |
324 |
Q |
| |
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|||||||| | ||| ||||||||||||||||||||| || ||| ||| ||| | || || || ||||||||| |||| |||| ||||||||||| |
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|
| T |
47973916 |
ttttccgtcatcaccacaaacaagaccaaaacctatatgagtgcatattggatattcatttggatcctttggaagccaccctgcacgcctaaaggcctga |
47974015 |
T |
|
| Q |
325 |
-aggaaaatcaaaaggga |
341 |
Q |
| |
|
|| |||| ||||||||| |
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|
| T |
47974016 |
tagaaaaaccaaaaggga |
47974033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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