View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_14 (Length: 439)
Name: NF18693_low_14
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 97 - 426
Target Start/End: Complemental strand, 42125559 - 42125248
Alignment:
| Q |
97 |
cactacttcatgtctcgtgtaactaaaattacttctgtgagcattttgattatgtgttgcttactttgatctttatcaattgctctcatagagcaactaa |
196 |
Q |
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| T |
42125559 |
cactacttcatgtctcgtgtaactaaaattacttctgtgagcattttgattatgtgatgctcactttgatctttatcaattgctctcatagagcaactaa |
42125460 |
T |
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| Q |
197 |
ttcaaacagataacaaagagcacattctgaccagaccaagctagaaaggcttcacggcattgctttcatgaacacgtac---cccaagaaattatggatg |
293 |
Q |
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| T |
42125459 |
ttcaaacagataacaaagagcacattctgaccagaccaagctagaaaggcttcacggcattgctttcatgaacacgtacgtacccaagaaattatggatg |
42125360 |
T |
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| Q |
294 |
ataattagaatgggtagcattgaatgttatatgaatgccattgaatgtcagcatgaatatgaattttgtgcattactggtaaatgtgtatgaaagtcatg |
393 |
Q |
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| T |
42125359 |
ataattagaatgggtagcattgaa---------------------tgtcagcatgaatatgaattttgtgcattactagtaaatgtgtatgaaagtcatg |
42125281 |
T |
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| Q |
394 |
gaaaggatcaaggtcatgtctctcaaataagtg |
426 |
Q |
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| T |
42125280 |
gaaaggatcaaggtcatgtctctcaaataagtg |
42125248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 42125612 - 42125554
Alignment:
| Q |
19 |
ttaattggtaacaactttatgaagtataatcgagagagaaattatttatatgtcactac |
77 |
Q |
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| T |
42125612 |
ttaattggtaacaactttatgaagtataatcgagagagaaattatttatatgtcactac |
42125554 |
T |
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