View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18693_low_15 (Length: 421)

Name: NF18693_low_15
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18693_low_15
NF18693_low_15
[»] chr3 (10 HSPs)
chr3 (1-408)||(7254739-7255150)
chr3 (129-379)||(41071422-41071672)
chr3 (227-372)||(51811085-51811230)
chr3 (220-332)||(7314038-7314149)
chr3 (122-175)||(47830005-47830058)
chr3 (277-384)||(1885127-1885235)
chr3 (267-326)||(53007574-53007633)
chr3 (277-319)||(11171866-11171908)
chr3 (98-147)||(25157996-25158045)
chr3 (267-304)||(35414370-35414407)
[»] chr8 (5 HSPs)
chr8 (104-384)||(6298392-6298676)
chr8 (265-385)||(16496015-16496137)
chr8 (276-386)||(14189563-14189674)
chr8 (276-384)||(12503301-12503410)
chr8 (339-386)||(27188449-27188496)
[»] chr7 (10 HSPs)
chr7 (161-384)||(10930818-10931045)
chr7 (246-384)||(12868418-12868557)
chr7 (205-296)||(13608571-13608661)
chr7 (277-384)||(31730692-31730800)
chr7 (267-320)||(31893787-31893840)
chr7 (262-364)||(22518367-22518469)
chr7 (265-318)||(24575877-24575930)
chr7 (123-161)||(6716098-6716136)
chr7 (283-333)||(26151486-26151536)
chr7 (265-297)||(12345583-12345615)
[»] chr5 (6 HSPs)
chr5 (246-384)||(24211520-24211659)
chr5 (281-384)||(12066838-12066944)
chr5 (277-385)||(15238911-15239020)
chr5 (253-293)||(7148491-7148531)
chr5 (283-323)||(8736663-8736703)
chr5 (84-141)||(27348423-27348484)
[»] chr1 (4 HSPs)
chr1 (203-386)||(34003155-34003338)
chr1 (279-326)||(37487331-37487378)
chr1 (275-384)||(15474608-15474718)
chr1 (267-304)||(10678003-10678040)
[»] chr4 (3 HSPs)
chr4 (98-179)||(35425872-35425953)
chr4 (267-325)||(6599561-6599619)
chr4 (246-333)||(48136305-48136391)
[»] chr2 (3 HSPs)
chr2 (276-364)||(26616025-26616113)
chr2 (247-333)||(15424623-15424708)
chr2 (279-342)||(14913450-14913513)
[»] chr6 (2 HSPs)
chr6 (246-365)||(8518330-8518449)
chr6 (98-197)||(17754624-17754723)
[»] scaffold0027 (1 HSPs)
scaffold0027 (275-346)||(38203-38274)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 7254739 - 7255150
Alignment:
Q  1 catcataatcgtcgccaatgatgcaaacctaaaatttcacaatttcaaccnnnnnnntctaacatttaaaccnnnnnnnnn-ctcaatgcaaaatgttaa 99  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||           ||||||||||||||||||    
T  7254739 catcataa-cgtcgccaatgatgcaaacctaaaatttcacaatttcatccaaaaaaatctaacatttaaacaaaaaaaaaaactcaatgcaaaatgttaa 7254837  T
Q  100 cactcacttgtgatggaagtagaatttgatgttgatttggttaagtttcgtgaaaatcgcacaaaatgggagaaaatttgcaaaaaatgagtatgaaaca 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||     
T  7254838 cactcacttgtgatggaagtagaatttgatgttgatttggttaagtttcgtgaaaatcgcacaaaatgggagaaaattcgcaaaaaattagtatgaaacg 7254937  T
Q  200 cactggttat----gtttctgtctgttgctattctataacaacacccactgtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctg 295  Q
    || |||||||    ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| ||||| |||||||||||||||||||    
T  7254938 cattggttatatatgtttctgtctgttgctattctataacaacacacagtgtgaataaagtcatgttgggtttataacctacgtgagttaactcacgctg 7255037  T
Q  296 aaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagtgctttttatgggagaagagcaattttcaagtaattatg 395  Q
    ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  7255038 aaagtaccgagtgtgacttaagtcatgcaggggtacttatgtccattcaatggggagtgagtgttttttatggtagaagagcaattttcaagtaattatg 7255137  T
Q  396 cataaattatatt 408  Q
    |||||||||||||    
T  7255138 cataaattatatt 7255150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 129 - 379
Target Start/End: Original strand, 41071422 - 41071672
Alignment:
Q  129 tgttgatttggttaagtttcgtgaaaatcgcacaaaatgggagaaaatttgcaaaaaatgagtatgaaacacactggt-tatgtttctgtctgttgctat 227  Q
    ||||||||||||  ||||| |||||||||||| |||||||||||||||| ||||||| ||||| ||||||| | |||  | ||||||||| ||||||| |    
T  41071422 tgttgatttggtcgagtttggtgaaaatcgcaaaaaatgggagaaaattcgcaaaaa-tgagtttgaaacagaatggaatgtgtttctgtttgttgctgt 41071520  T
Q  228 tctataacaacacccactgtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggg 327  Q
    ||||||||||||| ||  |||||| |||||| ||| | |||| ||| | |||||||||||||| || |||||||||  | |||||||||||| |   |||    
T  41071521 tctataacaacacacaacgtgagttaagtcacgttagatttataacttacgtgagttaactcaggccgaaagtaccaagtgtgacttaagtc-tcgtggg 41071619  T
Q  328 gtacttctgtccattcaatggggagtgagtgcttttt-atgggagaagagcaa 379  Q
    ||||||  |||| |||||| |||  |||||| ||||| |||| ||||||||||    
T  41071620 gtactttcgtccgttcaattgggcatgagtgttttttgatggtagaagagcaa 41071672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 227 - 372
Target Start/End: Complemental strand, 51811230 - 51811085
Alignment:
Q  227 ttctataacaacacccactgtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcagg 326  Q
    |||||||||| ||| ||  |||||| |||||| | || ||||| ||| || |||||||||| |||||||||||||||  ||||||||||||||| || ||    
T  51811230 ttctataacagcacgcagcgtgagttaagtcacgctgcgtttataacttgtgtgagttaacacacgctgaaagtaccaagcgtgacttaagtcacgc-gg 51811132  T
Q  327 ggtacttctgtccattcaatggggagtgagtgcttttt-atgggaga 372  Q
    |||||||  ||||||||| | |||  |||||| ||||| ||||||||    
T  51811131 ggtactttcgtccattcagttgggcatgagtgttttttgatgggaga 51811085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 332
Target Start/End: Original strand, 7314038 - 7314149
Alignment:
Q  220 gttgctattctataacaacacccactgtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtc 319  Q
    |||| |||||||||||| ||| ||  |||||| ||||||   |||||| ||||||||| |||||||| |||||||||||||| |  | ||||||||||||    
T  7314038 gttgttattctataacagcacacatcgtgagttaagtcacactgggtt-acaacctgcatgagttaagtcacgctgaaagtatcaagggtgacttaagtc 7314136  T
Q  320 atgcaggggtact 332  Q
    | | |||||||||    
T  7314137 aggtaggggtact 7314149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 47830005 - 47830058
Alignment:
Q  122 aatttgatgttgatttggttaagtttcgtgaaaatcgcacaaaatgggagaaaa 175  Q
    |||||||||| ||||||||| ||||| |||||||| ||| ||||||||||||||    
T  47830005 aatttgatgtagatttggttgagtttggtgaaaattgcaaaaaatgggagaaaa 47830058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 1885235 - 1885127
Alignment:
Q  277 cgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagtgcttttt-atgggagaaga 375  Q
    |||||||||||||||||||||| || |  |||| |||||||| | ||| | ||||||  | ||||||| | ||||| ||||| ||||| |||||||||||    
T  1885235 cgtgagttaactcacgctgaaaatatctagcgtaacttaagttacgcatgagtactttcgcccattcagttgggagggagtgttttttgatgggagaaga 1885136  T
Q  376 gcaattttc 384  Q
    ||| |||||    
T  1885135 gcatttttc 1885127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 53007574 - 53007633
Alignment:
Q  267 ttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcagg 326  Q
    |||||||||| ||||| |||| |||||||||| ||||  | |||||||||||||||||||    
T  53007574 ttacaacctgagtgagctaacccacgctgaaaataccaagtgtgacttaagtcatgcagg 53007633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 11171908 - 11171866
Alignment:
Q  277 cgtgagttaactcacgctgaaagtaccgggcgtgacttaagtc 319  Q
    |||||||||||||||| ||||||||||  ||||||||||||||    
T  11171908 cgtgagttaactcacgttgaaagtacctagcgtgacttaagtc 11171866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 25157996 - 25158045
Alignment:
Q  98 aacactcacttgtgatggaagtagaatttgatgttgatttggttaagttt 147  Q
    |||||| ||||||||| | ||||||| ||||||||||||||||| |||||    
T  25157996 aacacttacttgtgattgcagtagaagttgatgttgatttggttgagttt 25158045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 35414370 - 35414407
Alignment:
Q  267 ttacaacctgcgtgagttaactcacgctgaaagtaccg 304  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  35414370 ttacaacctgagtgagttaactcactctgaaagtaccg 35414407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 104 - 384
Target Start/End: Original strand, 6298392 - 6298676
Alignment:
Q  104 cacttgtgatggaagtagaatttgatgttgatttggttaagtttcgtgaaaatcgcacaaaatgggagaaaatttgcaaaaaatgagtatgaaacacact 203  Q
    |||||||||||||||||||||||||| |||||||| || ||||  |||||||||||||||| ||||||||| ||   ||||||||||| ||||||||| |    
T  6298392 cacttgtgatggaagtagaatttgatattgatttgattgagttcggtgaaaatcgcacaaagtgggagaaatttcataaaaaatgagtttgaaacacaat 6298491  T
Q  204 ggttatgtttctgtctgttgctattctataacaacacccactgtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtacc 303  Q
    |||||| ||| |||||||||   |||||||| ||||| || ||||||| |||||| | |||| ||||||| |  ||||||||| ||| | |||| |||||    
T  6298492 ggttatatttttgtctgttgtcgttctataataacacgcaatgtgagttaagtcacgctggg-ttacaacgtatgtgagttaattcatgttgaatgtacc 6298590  T
Q  304 gggcgtgacttaagtcatgca----ggggtacttctgtccattcaatggggagtgagtgctt-tttatgggagaagagcaattttc 384  Q
    |||||||||||| |||| | |    |||||||||  ||||||||| | ||||| ||||  || || ||||||||||||||||||||    
T  6298591 gggcgtgacttatgtcacgaacgtgggggtactttcgtccattcagttgggagcgagtatttattgatgggagaagagcaattttc 6298676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 265 - 385
Target Start/End: Complemental strand, 16496137 - 16496015
Alignment:
Q  265 gtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtga--gtgcttt 362  Q
    |||||||||||||||||||||||||||||||||| ||| | | ||||||||||||| ||| | ||| ||  ||||||||||| |||| |||  ||  |||    
T  16496137 gtttacaacctgcgtgagttaactcacgctgaaaatactgagtgtgacttaagtcacgcatgtgtaatttcgtccattcaattgggaatgaatgtttttt 16496038  T
Q  363 ttatgggagaagagcaattttca 385  Q
    |||||||||||||||||||||||    
T  16496037 ttatgggagaagagcaattttca 16496015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 14189674 - 14189563
Alignment:
Q  276 gcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagtgct-ttttatgggagaag 374  Q
    |||||||||||||||||||||||||| ||  | |||||||||||| ||| || || ||  ||||||||| | ||||||||||| | ||| ||||||||||    
T  14189674 gcgtgagttaactcacgctgaaagtatcgatcatgacttaagtcacgcatggataatttcgtccattcagttgggagtgagtgttatttgatgggagaag 14189575  T
Q  375 agcaattttcaa 386  Q
    ||||||||||||    
T  14189574 agcaattttcaa 14189563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 384
Target Start/End: Complemental strand, 12503410 - 12503301
Alignment:
Q  276 gcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagtgcttttt-atgggagaag 374  Q
    |||||||||||||||| | ||||||||   ||||||||||||||  |||| | |||||  ||| ||||| | ||||| ||||| |||||  |||||||||    
T  12503410 gcgtgagttaactcacacggaaagtactttgcgtgacttaagtcgcgcagagatactttcgtcgattcagttgggagggagtgttttttgttgggagaag 12503311  T
Q  375 agcaattttc 384  Q
    ||||||||||    
T  12503310 agcaattttc 12503301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 27188449 - 27188496
Alignment:
Q  339 cattcaatggggagtgagtgctttttatgggagaagagcaattttcaa 386  Q
    |||||| | |||||||||||||||| |||||||||||||| |||||||    
T  27188449 cattcagttgggagtgagtgcttttaatgggagaagagcacttttcaa 27188496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 384
Target Start/End: Complemental strand, 10931045 - 10930818
Alignment:
Q  161 caaaatgggagaaaatttgcaaaaaatgagtatgaaacacactggttatgtttctgtctgttgctattctataacaacacccactg-----tgagtaaag 255  Q
    ||||||||||||||||| ||||||  ||||| ||||||||| ||||||||||| ||||| ||| | |||||||||||||| ||  |     ||||| |||    
T  10931045 caaaatgggagaaaattcgcaaaa--tgagtttgaaacacaatggttatgtttttgtctattgttgttctataacaacacgcaacgcaacgtgagttaag 10930948  T
Q  256 tcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtga 355  Q
    |||  ||| ||||||||||| ||||||||||||||||||||||||| || ||||||||||||||| ||| ||||| ||  ||||||||| |   ||||||    
T  10930947 tcacattgtgtttacaaccttcgtgagttaactcacgctgaaagtatcgagcgtgacttaagtcacgcatgggtaatttcgtccattcagttaagagtga 10930848  T
Q  356 gtg-ctttttatgggagaagagcaattttc 384  Q
    |||  |||||||||  ||||||||||||||    
T  10930847 gtgtttttttatggatgaagagcaattttc 10930818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 384
Target Start/End: Complemental strand, 12868557 - 12868418
Alignment:
Q  246 gtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaa 345  Q
    |||||| |||||| |||| | ||||||||||||||||||||||||||  |||||||||  | ||||||||||||| ||| ||| ||||   ||||| ||     
T  12868557 gtgagttaagtcacgttgtggttacaacctgcgtgagttaactcacgtggaaagtacctagggtgacttaagtcacgcaagggcactttcatccatgcac 12868458  T
Q  346 tggggagtgagtgcttttt-atgggagaagagcaattttc 384  Q
    | || |||||||| ||||| ||||||||||||||||||||    
T  12868457 ttggtagtgagtgttttttgatgggagaagagcaattttc 12868418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 296
Target Start/End: Complemental strand, 13608661 - 13608571
Alignment:
Q  205 gttatgtttctgtctgttgctattctataacaacacccactgtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctga 296  Q
    |||||||||||| || ||| | |||||||||||||| || ||||||| |||||| | |||||||||||||||||||||||||||||||||||    
T  13608661 gttatgtttctgact-ttgttgttctataacaacacgcaatgtgagttaagtcacgatgggtttacaacctgcgtgagttaactcacgctga 13608571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 384
Target Start/End: Complemental strand, 31730800 - 31730692
Alignment:
Q  277 cgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagt-gctttttatgggagaaga 375  Q
    ||||| |||||||||||||||||||||| ||||||||| | |||| |   |||||||  ||| ||||||| ||||||||||   ||||||||||||||||    
T  31730800 cgtgacttaactcacgctgaaagtaccgagcgtgacttcactcatacgaaggtactttcgtctattcaattgggagtgagtatttttttatgggagaaga 31730701  T
Q  376 gcaattttc 384  Q
    |||||||||    
T  31730700 gcaattttc 31730692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 31893840 - 31893787
Alignment:
Q  267 ttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtca 320  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  31893840 ttacaacctgcgtgggttaactcacgctgaaaataccgagcgtgacttaagtca 31893787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 364
Target Start/End: Original strand, 22518367 - 22518469
Alignment:
Q  262 tgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagtgctt 361  Q
    |||||||| |||||  || ||||||||| |||||||||||||  | ||||||| ||||||||||||||| ||  ||||||| | | ||||| ||||| ||    
T  22518367 tgggtttataacctttgttagttaactcgcgctgaaagtacctagtgtgactttagtcatgcaggggtattttcgtccatttagttgggagggagtgttt 22518466  T
Q  362 ttt 364  Q
    |||    
T  22518467 ttt 22518469  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 318
Target Start/End: Complemental strand, 24575930 - 24575877
Alignment:
Q  265 gtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagt 318  Q
    ||||| ||||| |||||||||||||||||||||||||||  | |||||||||||    
T  24575930 gtttataacctacgtgagttaactcacgctgaaagtacctagtgtgacttaagt 24575877  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 6716098 - 6716136
Alignment:
Q  123 atttgatgttgatttggttaagtttcgtgaaaatcgcac 161  Q
    ||||||||||||||||||| ||||| |||||||||||||    
T  6716098 atttgatgttgatttggttgagtttggtgaaaatcgcac 6716136  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 333
Target Start/End: Complemental strand, 26151536 - 26151486
Alignment:
Q  283 ttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtactt 333  Q
    ||||||||||||||||||| || || ||||| |||||| ||||||||||||    
T  26151536 ttaactcacgctgaaagtatcgagcatgactgaagtcacgcaggggtactt 26151486  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Complemental strand, 12345615 - 12345583
Alignment:
Q  265 gtttacaacctgcgtgagttaactcacgctgaa 297  Q
    |||||||||||||||||||||||||| ||||||    
T  12345615 gtttacaacctgcgtgagttaactcaagctgaa 12345583  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 384
Target Start/End: Original strand, 24211520 - 24211659
Alignment:
Q  246 gtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaa 345  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||   |||||||  ||||||||||    
T  24211520 gtgagttaagtcatgttgggtttacaacctgcgggagttaactcacgctgaaagtaccgagcgtgacttaagtcacgcgaaggtactttcgtccattcaa 24211619  T
Q  346 tggggagtgagtg-ctttttatgggagaagagcaattttc 384  Q
    | |||  |||  |  |||||||| ||||||||||||||||    
T  24211620 ttgggcatgaaagtttttttatgcgagaagagcaattttc 24211659  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 281 - 384
Target Start/End: Complemental strand, 12066944 - 12066838
Alignment:
Q  281 agttaactcacgctgaaagtaccgggcgtgacttaagtcatgca-ggggtacttctgtccattcaatggggagtgagtgcttttt--atgggagaagagc 377  Q
    ||||||||||| |||||||||||   ||||||||||||||  || |||||||||| ||||||||| | ||||| ||||| |||||   ||||||||||||    
T  12066944 agttaactcaccctgaaagtacctaacgtgacttaagtcacacagggggtacttccgtccattcagttgggagggagtgtttttttgttgggagaagagc 12066845  T
Q  378 aattttc 384  Q
    | |||||    
T  12066844 atttttc 12066838  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 385
Target Start/End: Original strand, 15238911 - 15239020
Alignment:
Q  277 cgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagtgcttttt-atgggagaaga 375  Q
    ||||||||||||||||| | || ||||   |||||||||||||| || || ||||||  ||| ||||| | ||||||||| | |||||  ||||||||||    
T  15238911 cgtgagttaactcacgcaggaaatacctaacgtgacttaagtcacgcgggagtactttcgtcaattcagttgggagtgagcgttttttgttgggagaaga 15239010  T
Q  376 gcaattttca 385  Q
    ||||||||||    
T  15239011 gcaattttca 15239020  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 7148491 - 7148531
Alignment:
Q  253 aagtcatgttgggtttacaacctgcgtgagttaactcacgc 293  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  7148491 aagtcatgttgggtttaacacatgcgtgagttaactcacgc 7148531  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 8736663 - 8736703
Alignment:
Q  283 ttaactcacgctgaaagtaccgggcgtgacttaagtcatgc 323  Q
    |||||||||| ||||||||||| ||||||||||| ||||||    
T  8736663 ttaactcacgttgaaagtaccgagcgtgacttaactcatgc 8736703  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 27348423 - 27348484
Alignment:
Q  84 caatgcaaaatgtta----acactcacttgtgatggaagtagaatttgatgttgatttggtt 141  Q
    |||||||||||||||    ||||| |||| |||| ||||||||| |||||||||||||||||    
T  27348423 caatgcaaaatgttagagaacacttacttttgattgaagtagaaattgatgttgatttggtt 27348484  T

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Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 203 - 386
Target Start/End: Original strand, 34003155 - 34003338
Alignment:
Q  203 tggttatgtttctgtctgttgctattctataacaacacccactgtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtac 302  Q
    |||||||||||||  || ||||| || ||||||||||| ||  |||| | |||||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  34003155 tggttatgtttctaact-ttgctgttatataacaacacacaacgtgaattaagtcatgctgggtttacaatctgcgtgagttaactcatgctgaaagtac 34003253  T
Q  303 cgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagtg-ctttttatgggagaagagcaattttcaa 386  Q
    |  |  |||||||||||| | || |||||||  ||||||||| | ||||| |||||  |||||||| ||||||| ||||||||||    
T  34003254 ctagaatgacttaagtcacgtagaggtactttcgtccattcagttgggagggagtgtttttttatgtgagaagaacaattttcaa 34003338  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 37487331 - 37487378
Alignment:
Q  279 tgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcagg 326  Q
    ||||||||||||||||||||||| || ||||||||||| ||| |||||    
T  37487331 tgagttaactcacgctgaaagtatcgagcgtgacttaactcacgcagg 37487378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 384
Target Start/End: Original strand, 15474608 - 15474718
Alignment:
Q  275 tgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagtgcttttt-atgggagaa 373  Q
    ||||||||||||| |||||| ||||||||  |||||| |||||||  |||  |||||||  ||||||||||| |||||  |||| |||||  ||||||||    
T  15474608 tgcgtgagttaacccacgctaaaagtaccctgcgtgaattaagtcgcgcataggtactttcgtccattcaattgggaggaagtgttttttgttgggagaa 15474707  T
Q  374 gagcaattttc 384  Q
    || || |||||    
T  15474708 gaccatttttc 15474718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 10678040 - 10678003
Alignment:
Q  267 ttacaacctgcgtgagttaactcacgctgaaagtaccg 304  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  10678040 ttacaacctgagtgagttaactaacgctgaaagtaccg 10678003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 35425872 - 35425953
Alignment:
Q  98 aacactcacttgtgatggaagtagaatttgatgttgatttggttaagtttcgtgaaaatcgcacaaaatgggagaaaatttg 179  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||||||| |||||| | ||| ||| ||||||||||||||    
T  35425872 aacacttacttgtggtggaagtataatttgatgttgatttggttaagtttggtgaaatttgcaaaaattgggagaaaatttg 35425953  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 325
Target Start/End: Original strand, 6599561 - 6599619
Alignment:
Q  267 ttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcag 325  Q
    |||| ||||| ||||||||||||||||||||||||| |  |||||||||||||| ||||    
T  6599561 ttaccacctgtgtgagttaactcacgctgaaagtactgaacgtgacttaagtcacgcag 6599619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 48136305 - 48136391
Alignment:
Q  246 gtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtactt 333  Q
    |||||| |||||| ||||| |||| ||| | |||||||||||||||| ||||||||||   |||||||||| ||| ||| ||||||||    
T  48136305 gtgagttaagtcacgttgg-tttataacattcgtgagttaactcacgttgaaagtacccaacgtgacttaactcacgcaagggtactt 48136391  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 26616113 - 26616025
Alignment:
Q  276 gcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaatggggagtgagtgcttttt 364  Q
    ||||||||||||||||| ||||||||||  |||| |||||||||| ||| |||||||| |||||||||| | ||||| ||||| |||||    
T  26616113 gcgtgagttaactcacggtgaaagtacctagcgtaacttaagtcacgcaagggtacttttgtccattcagttgggagggagtgtttttt 26616025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 247 - 333
Target Start/End: Original strand, 15424623 - 15424708
Alignment:
Q  247 tgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtactt 333  Q
    ||||| |||||| | | ||||||||||||   |||||||||||||| ||||||||||| ||||||||||||||| || |||||||||    
T  15424623 tgagttaagtcacgctaggtttacaacctctatgagttaactcacgatgaaagtaccgagcgtgacttaagtcacgc-ggggtactt 15424708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 14913450 - 14913513
Alignment:
Q  279 tgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccatt 342  Q
    |||||||||||||| ||||||||||  ||||||||||||||| ||| ||||||||  |||||||    
T  14913450 tgagttaactcacgatgaaagtacctagcgtgacttaagtcacgcatgggtactttcgtccatt 14913513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 365
Target Start/End: Complemental strand, 8518449 - 8518330
Alignment:
Q  246 gtgagtaaagtcatgttgggtttacaacctgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaa 345  Q
    |||||| |||||| | |||||| ||||||||| |||||||| | |||||||||| |  | ||||||||||||  | |||||||||||| ||||||||||     
T  8518449 gtgagtcaagtcacgctgggttgacaacctgcttgagttaatttacgctgaaagcattgagcgtgacttaagctacgcaggggtacttttgtccattcag 8518350  T
Q  346 tggggagtgagtgcttttta 365  Q
    | || | |||||| ||||||    
T  8518349 ttggaaatgagtgtttttta 8518330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 17754723 - 17754624
Alignment:
Q  98 aacactcacttgtgatggaagtagaatttgatgttgatttggttaagtttcgtgaaaatcgcacaaaatgggagaaaatttgcaaaaaatgagtatgaaa 197  Q
    |||||| ||| ||||||||| ||||||| ||||||||||||||| ||||| ||||||| |||| ||| ||| |||||| | ||||| ||| ||| |||||    
T  17754723 aacacttactcgtgatggaaatagaattagatgttgatttggtttagtttggtgaaaaacgcagaaactggaagaaaaatcgcaaataattagtttgaaa 17754624  T

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Target: scaffold0027 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 346
Target Start/End: Original strand, 38203 - 38274
Alignment:
Q  275 tgcgtgagttaactcacgctgaaagtaccgggcgtgacttaagtcatgcaggggtacttctgtccattcaat 346  Q
    ||||||||||||||||||||||||||| |   || || |||||||  ||| ||||||||| |||||||||||    
T  38203 tgcgtgagttaactcacgctgaaagtatcctccgcgagttaagtcgcgcatgggtacttccgtccattcaat 38274  T

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