View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_16 (Length: 410)
Name: NF18693_low_16
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 25606014 - 25605627
Alignment:
| Q |
1 |
tataataactgatatgacaatcggaaataagaaatagcaagagttttgtcaaaataaaacagaaagagttcatctgttactaacccaatattacaaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25606014 |
tataataactgatatgacaatcggaaataagaaatagcaagagttttgtcaaaataaaacagaaagagttcatctgttactaacccaatattacaaatgt |
25605915 |
T |
|
| Q |
101 |
ctacacggaaattttaaaatataatcatcaaaagggatagatactttgaacaaaaatcaacatatacacttaattactgatcccatcatccaaatggtgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25605914 |
ctacacggaaattttaaaatataatcatcaaaagggatagatactttgaacaaaaatcaacatatacacttaattactgatcccatcatccaaatggtgc |
25605815 |
T |
|
| Q |
201 |
aaagggattgtcctctttgttgtttgaaaggcacccctcattggcaagttctgtttattgttttgatcaaataacaaacaaaggttttaatatgttttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25605814 |
aaagggattgtcctctttgttgtttgaaaggcacccctcattggcaagttctgtttattgttttgatcaaataacaaacaaaggttttaatatgttttga |
25605715 |
T |
|
| Q |
301 |
tcaaaaaagaacaagggcatgactcaaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtcaa |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25605714 |
tcaaaaaagaacaagggcatgactcaaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtcaa |
25605627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 25888189 - 25887789
Alignment:
| Q |
5 |
ataactgatatgacaatcggaaataagaaatagcaagagttttgtcaaaa------taaaacagaaagagttcatctgttactaacccaatattac---- |
94 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
25888189 |
ataactgatatgacaataggaaataagaaatagtaagagttttgtcaaaaaaataataaaacagaaagagttcatctgttacaaacccaatattacttac |
25888090 |
T |
|
| Q |
95 |
aaatgtctacacggaaattttaaaatataatcatcaaaagggatagatactttgaacaaaaatcaacatatacacttaattactgatcccatcatccaaa |
194 |
Q |
| |
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|| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25888089 |
aagtgtctccagggaaattttgaaatataatcatcaaaagggatagatactttgaacaaaaatcaacatatacacttaatttctgatcccatcatccaaa |
25887990 |
T |
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| Q |
195 |
tggtgcaaagggattgtcctctttgttgtttgaaaggcacccctcattggcaagttctgtttattgttttgatcaaataacaaacaaagg--------tt |
286 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25887989 |
tggtgcaaagggattgtcctctttgttgtttgaaaggcgcccctccttggcaagttctgtttattgttttgatcaaataacaaacaaaggtgaggatatt |
25887890 |
T |
|
| Q |
287 |
ttaatatgttttgatcaaaaaagaacaagggcatgactcaaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtc |
386 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25887889 |
ttaatatgttttgatcaaaaaagaacaa-ggcatgactcaaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtc |
25887791 |
T |
|
| Q |
387 |
aa |
388 |
Q |
| |
|
|| |
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|
| T |
25887790 |
aa |
25887789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 5 - 388
Target Start/End: Complemental strand, 25862449 - 25862051
Alignment:
| Q |
5 |
ataactgatatgacaatcggaaataagaaatagcaagagttttgtcaaaa------taaaacagaaagagttcatctgttactaacccaatattacaaat |
98 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
25862449 |
ataactgatatgacaataggaaataagaaatagtaagagttttgtcaaaaaaataataaaacagaaagagttcatctgttacaaacccaatattacaagt |
25862350 |
T |
|
| Q |
99 |
gtctacacggaaattttaaaatataatcatcaaaagggatagatactttgaacaaaaatcaacatatacacttaattactgatcccatcatccaaatggt |
198 |
Q |
| |
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|||| || ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25862349 |
gtctccagggaaattttgaaatataataatcaaaagggatagatactttgaacaaaaatcaacatatacacttaatttctgatcccatcatccaaatggt |
25862250 |
T |
|
| Q |
199 |
gcaaagggattgtcctctttgttgtttgaaaggcacccctcattggcaagttctgtttattgttttgatcaaataacaaacaaagg--------ttttaa |
290 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25862249 |
gcaaagggattgtcctctttgttgtttgaaaggcacccctcattggcaaattctgtttattgttttgatcaaataacaaacaaaggtgaggatattttaa |
25862150 |
T |
|
| Q |
291 |
tatgttttgat--caaaaaagaacaagggcatgactcaaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtcaa |
388 |
Q |
| |
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||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||| |
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| T |
25862149 |
tatgttttgataaaaaaaaagaacaa-ggcatgactcaaacttaccttcaggtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaa |
25862051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 388
Target Start/End: Original strand, 25481582 - 25481984
Alignment:
| Q |
5 |
ataactgatatgacaatcggaaataagaaatagcaagagttttgtcaaaa------taaaacagaaagagttcatctgttactaacccaatattac---- |
94 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
25481582 |
ataactgatatgacaataggaaataagaaatagtaagagttttgtcaaaaaaataataaaacagaaagagttcatctgttacaaacccaatattacttac |
25481681 |
T |
|
| Q |
95 |
aaatgtctacacggaaattttaaaatataatcatcaaaagggatagatactttgaacaaaaatcaacatatacacttaattactgatcccatcatccaaa |
194 |
Q |
| |
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|| ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25481682 |
aagtgtctccagggaaattttgaaatataatcatcaaaagggatagatactttgaacaaaaatcaacatatacacttaatttctgatcccatcatccaaa |
25481781 |
T |
|
| Q |
195 |
tggtgcaaagggattgtcctctttgttgtttgaaaggcacccctcattggcaagttctgtttattgttttgatcaaataacaaacaaagg--------tt |
286 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
25481782 |
tggtgcaaagggattgtcctctttgttgtttgaaaggcacccctcattggcaaattctgtttattgttttgatcaaataacaaacaaaggtgaggatatt |
25481881 |
T |
|
| Q |
287 |
ttaatatgttttgat--caaaaaagaacaagggcatgactcaaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcg |
384 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||| |
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| T |
25481882 |
ttaatatgttttgataaaaaaaaagaacaa-ggcatgactcaaacttaccttcaggtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcg |
25481980 |
T |
|
| Q |
385 |
tcaa |
388 |
Q |
| |
|
|||| |
|
|
| T |
25481981 |
tcaa |
25481984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 50669653 - 50669613
Alignment:
| Q |
239 |
cattggcaagttctgtttattgttttgatcaaataacaaac |
279 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||| |||| |
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|
| T |
50669653 |
cattagcaacttctgtttattgttttgatcaaataagaaac |
50669613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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