View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18693_low_2 (Length: 609)

Name: NF18693_low_2
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18693_low_2
NF18693_low_2
[»] chr5 (8 HSPs)
chr5 (181-593)||(3113196-3113608)
chr5 (287-530)||(3119449-3119692)
chr5 (1-110)||(3113679-3113788)
chr5 (1-98)||(15291548-15291645)
chr5 (3-110)||(433779-433886)
chr5 (182-264)||(3120116-3120199)
chr5 (3-108)||(27337180-27337285)
chr5 (3-81)||(25662859-25662937)
[»] chr2 (9 HSPs)
chr2 (1-91)||(4412598-4412688)
chr2 (1-98)||(9684940-9685037)
chr2 (1-98)||(41867433-41867530)
chr2 (1-98)||(17345123-17345220)
chr2 (1-98)||(20142265-20142362)
chr2 (1-98)||(18744543-18744640)
chr2 (3-108)||(44686904-44687009)
chr2 (1-105)||(19161344-19161448)
chr2 (5-98)||(28225489-28225581)
[»] chr7 (4 HSPs)
chr7 (3-108)||(5827741-5827846)
chr7 (5-108)||(47679613-47679713)
chr7 (1-64)||(4501743-4501806)
chr7 (304-369)||(28532726-28532791)
[»] chr3 (4 HSPs)
chr3 (1-106)||(52411419-52411524)
chr3 (1-98)||(53786193-53786290)
chr3 (1-106)||(49018437-49018542)
chr3 (1-108)||(29862282-29862390)
[»] chr6 (4 HSPs)
chr6 (3-108)||(34304984-34305089)
chr6 (32-107)||(29337602-29337677)
chr6 (1-60)||(45232-45291)
chr6 (1-58)||(4206161-4206218)
[»] chr1 (4 HSPs)
chr1 (1-91)||(19035912-19036002)
chr1 (1-98)||(28040652-28040749)
chr1 (1-106)||(37200740-37200845)
chr1 (1-106)||(38732068-38732173)
[»] chr8 (9 HSPs)
chr8 (3-91)||(39435154-39435242)
chr8 (1-106)||(500712-500817)
chr8 (2-98)||(24125514-24125609)
chr8 (1-98)||(37517574-37517671)
chr8 (7-105)||(25021320-25021418)
chr8 (18-85)||(4006978-4007045)
chr8 (302-369)||(12694342-12694409)
chr8 (7-106)||(42921647-42921746)
chr8 (6-108)||(10190033-10190135)
[»] chr4 (6 HSPs)
chr4 (1-98)||(53170983-53171080)
chr4 (1-108)||(56461629-56461736)
chr4 (6-82)||(32335341-32335417)
chr4 (27-108)||(25707013-25707095)
chr4 (1-106)||(16958020-16958125)
chr4 (1-105)||(48505716-48505820)


Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 181 - 593
Target Start/End: Complemental strand, 3113608 - 3113196
Alignment:
Q  181 tatgtattatatgtatcatgtttagaaattgaaaacatgagtactctatacagtttaatcagataatagaaatagttaaaggtgcaatcttttaaaaaag 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3113608 tatgtattatatgtatcatgtttagaaattgaaaacatgagtactctatacagtttaatcagataatagaaatagttaaaggtgcaatcttttaaaaaag 3113509  T
Q  281 gacatattttgctttttgctcaattgtcaggaagctggaacaatctatacccatcatcagaagacagtcattgtggatgccgatgctggtcagcataaaa 380  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3113508 gacaaattttgctttttgctcaattgtcaggaagctggaacaatctatacccatcatcagaagacagtcattgtggatgccgatgctggtcagcataaaa 3113409  T
Q  381 gaaagattgtagctttcattggaggccttgatttatgtctcggaagatatgatactccagcacattctctctttaggactttgcagacaacacacaaaga 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3113408 gaaagattgtagctttcattggaggccttgatttatgtctcggaagatatgatactccagcacattctctctttaggactttgcagacaacacacaaaga 3113309  T
Q  481 tgactttcataatcctaactttgtggttagttatccattttttattttcactagttttcattgccagtgttataagtatggcattaaatgagacatggtt 580  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3113308 tgactttcataatcctaactttgtggttagttatccattttttattttcactagttttcattgcaagtgttataagtatggcattaaatgagacatggtt 3113209  T
Q  581 tgaaaatgtgttt 593  Q
    |||||||||||||    
T  3113208 tgaaaatgtgttt 3113196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 287 - 530
Target Start/End: Complemental strand, 3119692 - 3119449
Alignment:
Q  287 ttttgctttttgctcaattgtcaggaagctggaacaatctatacccatcatcagaagacagtcattgtggatgccgatgctggtcagcataaaagaaaga 386  Q
    ||||||||| || |||||||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3119692 ttttgctttctgatcaattgctaggaagctggaacaatctatactcatcaccagaagacagtcattgtggatgctgatgctggtcagcataaaagaaaga 3119593  T
Q  387 ttgtagctttcattggaggccttgatttatgtctcggaagatatgatactccagcacattctctctttaggactttgcagacaacacacaaagatgactt 486  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3119592 ttgtagctttcatcggaggccttgatttatgtctcggaagatatgatactccagcgcattctctctttaggactttgcagacaacacacaaagatgactt 3119493  T
Q  487 tcataatcctaactttgtggttagttatccattttttattttca 530  Q
    ||||||||||||||  | ||||||| ||||||||||||||||||    
T  3119492 tcataatcctaactacgaggttagtcatccattttttattttca 3119449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 3113788 - 3113679
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3113788 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggagaaaatcttgagcatgtgctgcttccaaacacc 3113689  T
Q  101 ctaaaactac 110  Q
    ||||||||||    
T  3113688 ctaaaactac 3113679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 15291645 - 15291548
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    ||||||||||||||||||||||||  |||| |||||||||||||  ||||||| ||||||||||| | ||||||  ||||||||||||||| ||||||    
T  15291645 ctaaggatagtacgatactccactggtgacatatgctgacctaacccatcaattgggatagctagaagaaaatcccgagcatgtgctgcttgcaaaca 15291548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 110
Target Start/End: Original strand, 433779 - 433886
Alignment:
Q  3 aaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccct 102  Q
    ||||||||| |||||||| | |  |||| ||||||| |||||  ||||||| ||||||||||| | ||||||||||||||||| ||||| |||||| |||    
T  433779 aaggatagtccgatactcaattggtgacatatgctggcctaacccatcaattgggatagctagaagaaaatcttgagcatgtggtgcttgcaaacatcct 433878  T
Q  103 aaaactac 110  Q
    ||||||||    
T  433879 aaaactac 433886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 3120199 - 3120116
Alignment:
Q  182 atgtattatatgtatcatgttt-agaaattgaaaacatgagtactctatacagtttaatcagataatagaaatagttaaaggtg 264  Q
    |||||||||||||||||||||| |||| |||||||||| ||||| ||||||||||||| || | ||||||||||||| ||||||    
T  3120199 atgtattatatgtatcatgttttagaagttgaaaacataagtacgctatacagtttaaacaaagaatagaaatagttgaaggtg 3120116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 27337180 - 27337285
Alignment:
Q  3 aaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccct 102  Q
    |||||||||||| ||||| |||  |||| |||||| ||||||  ||||||| ||||||||||  | ||||||||||||||||| || || |||||| ||     
T  27337180 aaggatagtacggtactcaactggtgacatatgctaacctaacccatcaattgggatagctaaaagaaaatcttgagcatgtggtggttgcaaacatccc 27337279  T
Q  103 aaaact 108  Q
    ||||||    
T  27337280 aaaact 27337285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 25662937 - 25662859
Alignment:
Q  3 aaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagca 81  Q
    |||||||||||| || ||||||  |||| |||||||||| ||  ||||||| ||||||||||| | |||||||||||||    
T  25662937 aaggatagtacggtattccactggtgacatatgctgacccaacccatcaattgggatagctagaagaaaatcttgagca 25662859  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 4412688 - 4412598
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgctt 91  Q
    ||||||||||||||||||||||||  |||| ||||||||||||| |||||||||||||||||||| | |||||| |||||||||| |||||    
T  4412688 ctaaggatagtacgatactccactggtgacatatgctgacctaactcatcaatcgggatagctagaagaaaatcctgagcatgtgttgctt 4412598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 9685037 - 9684940
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    ||||||||||||||||||||||||  |||| |||||||||||||  ||||||| ||||||||||| | ||||||||||| ||||||||||| ||||||    
T  9685037 ctaaggatagtacgatactccactggtgacatatgctgacctaacccatcaatagggatagctagaagaaaatcttgagtatgtgctgcttgcaaaca 9684940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 41867530 - 41867433
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    ||||||||||||||||||||||||  |||| |||||||||||||  ||||||||||||||||||| | |||||  |||||||||||||||| ||||||    
T  41867530 ctaaggatagtacgatactccactggtgacatatgctgacctaacccatcaatcgggatagctagaagaaaattctgagcatgtgctgcttgcaaaca 41867433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 17345123 - 17345220
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||  ||||||| ||||||||||| | ||||||||||||||||| | ||| ||||||    
T  17345123 ctaaggatagtacgatactccactagtgacatatgccgacctaacccatcaattgggatagctagaagaaaatcttgagcatgtggttcttgcaaaca 17345220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 20142362 - 20142265
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    ||||||||||||| ||||||||||  |||| ||||||||| |||  ||||||||||||||||||| | |||||| |||||||||||||||| ||||||    
T  20142362 ctaaggatagtacaatactccactgttgacatatgctgacttaacccatcaatcgggatagctagaagaaaatcctgagcatgtgctgcttgcaaaca 20142265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 18744640 - 18744543
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||  ||||||||||||||||||| | ||| |||||||||| || ||||| ||||||    
T  18744640 ctaaggatagtacgatactccactggtgacatatgctaacctaacccatcaatcgggatagctagaagaaattcttgagcatttggtgcttgcaaaca 18744543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 44686904 - 44687009
Alignment:
Q  3 aaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccct 102  Q
    |||||||||||||||||||| |  |||| ||| |||||||||  ||||||| | ||||||||| | |||||||| |||||||||||||| |||||| ||     
T  44686904 aaggatagtacgatactccattggtgacatatactgacctaacccatcaattgagatagctagaagaaaatcttaagcatgtgctgcttgcaaacatcca 44687003  T
Q  103 aaaact 108  Q
    ||||||    
T  44687004 aaaact 44687009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 19161448 - 19161344
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||   ||||||| |||||||||| | |||||| ||||||| |  ||||| |||||| |    
T  19161448 ctaatgatagtacgatactccactgatgacatatgctgacctaacctatcaatcaggatagctagaagaaaatcctgagcatatattgcttgcaaacatc 19161349  T
Q  101 ctaaa 105  Q
    |||||    
T  19161348 ctaaa 19161344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 28225489 - 28225581
Alignment:
Q  5 ggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    |||||||||| |||||| ||  |||| |||||||| ||||  ||||||| || |||||||| | ||||||||||||||||||| ||| ||||||    
T  28225489 ggatagtacggtactccgctggtgacatatgctgatctaacccatcaattgg-atagctagaagaaaatcttgagcatgtgcttcttgcaaaca 28225581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 5827741 - 5827846
Alignment:
Q  3 aaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccct 102  Q
    |||||||||||| |||||||||  |||| |||||||||||||  ||||||| ||||||||||| | ||||| ||||||||||||||||| |||||| |||    
T  5827741 aaggatagtacggtactccactggtgacatatgctgacctaacccatcaattgggatagctagaagaaaattttgagcatgtgctgcttgcaaacatcct 5827840  T
Q  103 aaaact 108  Q
    ||||||    
T  5827841 aaaact 5827846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 47679613 - 47679713
Alignment:
Q  5 ggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccctaa 104  Q
    |||||||||| |||||||||   ||| |||| |||| ||| ||||||||| |||||||||| | |||||| |||||||||||| ||| |||||| |||||    
T  47679613 ggatagtacgttactccact---gacatatgttgacataactcatcaatcaggatagctagaagaaaatcctgagcatgtgctacttgcaaacatcctaa 47679709  T
Q  105 aact 108  Q
    ||||    
T  47679710 aact 47679713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4501743 - 4501806
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagcta 64  Q
    |||||||||||||||||||||| |  |||| |||||||||||||   |||||||||||||||||    
T  4501743 ctaaggatagtacgatactccattggtgacatatgctgacctaacatatcaatcgggatagcta 4501806  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 304 - 369
Target Start/End: Original strand, 28532726 - 28532791
Alignment:
Q  304 ttgtcaggaagctggaacaatctatacccatcatcagaagacagtcattgtggatgccgatgctgg 369  Q
    ||||||||||| |||||| || ||||| ||||||||||| || || ||||||||||| ||||||||    
T  28532726 ttgtcaggaagttggaaccatatatacacatcatcagaaaactgtaattgtggatgctgatgctgg 28532791  T

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Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 52411524 - 52411419
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    |||||||||| |||||||||||||  |||| ||||||||| ||| |||||||||||||||||||| | |||||| |||||||| ||||| | ||||||||    
T  52411524 ctaaggatagcacgatactccactcgtgacatatgctgacttaactcatcaatcgggatagctagaagaaaatcatgagcatgcgctgcatgcaaacacc 52411425  T
Q  101 ctaaaa 106  Q
    ||||||    
T  52411424 ctaaaa 52411419  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 53786193 - 53786290
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    ||||||||| ||||||||||||||  |||| |||||||||||||  |||||||| | |||||||| | ||||||||||||||||| ||||| ||||||    
T  53786193 ctaaggataatacgatactccactggtgacatatgctgacctaacccatcaatcagaatagctagaagaaaatcttgagcatgtggtgcttgcaaaca 53786290  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 49018437 - 49018542
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    |||| |||||| ||||||||||||  |||| |  ||||||||||  |||||||| |||||||||| | |||||| ||||||||| |||||| |||||| |    
T  49018437 ctaatgatagttcgatactccacttgtgacatgcgctgacctaacccatcaatcaggatagctagaagaaaatcatgagcatgtactgcttgcaaacatc 49018536  T
Q  101 ctaaaa 106  Q
    ||||||    
T  49018537 ctaaaa 49018542  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 29862282 - 29862390
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgac-ctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacac 99  Q
    |||||||||||||| |||| ||||  |||| |||||||||  |||  ||||||||| ||||||||| | |||||| |||||||||| || || ||||||     
T  29862282 ctaaggatagtacgctacttcactggtgacatatgctgactttaacccatcaatcgagatagctagaagaaaatcatgagcatgtgttgtttgcaaacat 29862381  T
Q  100 cctaaaact 108  Q
    |||||||||    
T  29862382 cctaaaact 29862390  T

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Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 34304984 - 34305089
Alignment:
Q  3 aaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccct 102  Q
    |||||||||||| |||||||||  |||| ||||||||| |||  ||||||| |||||| |||| | |||||||||||||||||||||||||||||| ||     
T  34304984 aaggatagtacggtactccactggtgacatatgctgacataacccatcaattgggatacctagaataaaatcttgagcatgtgctgcttccaaacatcca 34305083  T
Q  103 aaaact 108  Q
    ||||||    
T  34305084 aaaact 34305089  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 29337677 - 29337602
Alignment:
Q  32 tatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccctaaaac 107  Q
    |||||||||||||  |||||||| |||||||||| | |||||| |||||||||||||||| ||||||||| |||||    
T  29337677 tatgctgacctaacccatcaatcaggatagctagaagaaaatcctgagcatgtgctgcttgcaaacaccccaaaac 29337602  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45291 - 45232
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggata 60  Q
    |||||||||||| ||||||||||  ||||| |||||||||||||  ||||||||||||||    
T  45291 ctaaggatagtatgatactccacagatgacatatgctgacctaacccatcaatcgggata 45232  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4206218 - 4206161
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcggga 58  Q
    |||||||||||||| |||||||||  |||| |||||||||||||  ||||||||||||    
T  4206218 ctaaggatagtacggtactccactggtgacatatgctgacctaacccatcaatcggga 4206161  T

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Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 19035912 - 19036002
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgctt 91  Q
    |||||||||||| |||||||||||  |||| |||| |||||||| |||||||||||||||||||| | ||||||  |||||||||||||||    
T  19035912 ctaaggatagtatgatactccactggtgacatatgttgacctaactcatcaatcgggatagctagaagaaaatcccgagcatgtgctgctt 19036002  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28040749 - 28040652
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    |||||||||||| |||||||||||  |||| |||| ||||||||   |||||||||||||||||| | |||||||||||||||| |||||| ||||||    
T  28040749 ctaaggatagtatgatactccactggtgacatatgttgacctaaccaatcaatcgggatagctagaagaaaatcttgagcatgttctgcttgcaaaca 28040652  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 37200740 - 37200845
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    |||||||||||| |||||||||||| |||| |||||||||||||  |||| ||  |||||| ||  | |||||  |||||||||||| ||| ||||||||    
T  37200740 ctaaggatagtatgatactccactagtgacatatgctgacctaacccatccatatggatagttaaaagaaaatgatgagcatgtgctacttgcaaacacc 37200839  T
Q  101 ctaaaa 106  Q
     |||||    
T  37200840 ttaaaa 37200845  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 38732068 - 38732173
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    |||||||||||||| ||||||||| ||||| |||||||||  ||  |||| ||| |||||||||  | |||||| |||| || || ||||| |||||| |    
T  38732068 ctaaggatagtacggtactccactgatgacatatgctgacacaacccatccatcaggatagctacaagaaaatcatgagaatttgttgctttcaaacatc 38732167  T
Q  101 ctaaaa 106  Q
    ||||||    
T  38732168 ctaaaa 38732173  T

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Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 39435154 - 39435242
Alignment:
Q  3 aaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgctt 91  Q
    |||||||||||| ||||| |||| |||| |||||||||||||  ||||||| ||||||||||| | ||||||||||||||||| |||||    
T  39435154 aaggatagtacggtactcaactagtgacatatgctgacctaacccatcaattgggatagctagaagaaaatcttgagcatgtggtgctt 39435242  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 500712 - 500817
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    |||||||||||||| ||||||| |  |||| ||||||||||||| ||||||||| |||| ||||| | |||||| ||||||| |||||||| |||| | |    
T  500712 ctaaggatagtacggtactccattggtgacatatgctgacctaactcatcaatcaggattgctagaagaaaatcatgagcatatgctgcttgcaaatatc 500811  T
Q  101 ctaaaa 106  Q
    ||||||    
T  500812 ctaaaa 500817  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 24125514 - 24125609
Alignment:
Q  2 taaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    ||||||||||||| |||||||||  |||| ||| |||||||||  ||||||||||||||||||| | |||||| |||||||||| ||||| ||||||    
T  24125514 taaggatagtacggtactccactg-tgacatatcctgacctaacccatcaatcgggatagctagaagaaaatcctgagcatgtgatgcttgcaaaca 24125609  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 37517574 - 37517671
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    ||||||||| || |||||||||||  |||| |||| ||||||||  ||||||||||||||  ||| | |||||| |||||||||||||||| ||||||    
T  37517574 ctaaggatattatgatactccactggtgacatatgttgacctaacccatcaatcgggatacttagaagaaaatcatgagcatgtgctgcttgcaaaca 37517671  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 25021418 - 25021320
Alignment:
Q  7 atagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccctaaa 105  Q
    ||||||| ||||| ||||  |||| | ||||||| |||  |||||||  ||||| |||| | ||||||||||||||||||||||| |||||||||||||    
T  25021418 atagtactatacttcactggtgacatgtgctgacttaacccatcaatatggataactagaagaaaatcttgagcatgtgctgcttgcaaacaccctaaa 25021320  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 4007045 - 4006978
Alignment:
Q  18 ctccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtg 85  Q
    ||||||||||||| ||||||||| |||  |||||||| |||||||||| | |||||| ||||||||||    
T  4007045 ctccactaatgacatatgctgacttaacccatcaatcaggatagctagaagaaaatcatgagcatgtg 4006978  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 302 - 369
Target Start/End: Complemental strand, 12694409 - 12694342
Alignment:
Q  302 aattgtcaggaagctggaacaatctatacccatcatcagaagacagtcattgtggatgccgatgctgg 369  Q
    |||| |||||||| ||||||||| ||||| |||||||||||||| || ||||| ||||| ||||||||    
T  12694409 aattctcaggaagttggaacaatatatacacatcatcagaagactgtaattgtagatgctgatgctgg 12694342  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 42921746 - 42921647
Alignment:
Q  7 atagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccctaaaa 106  Q
    |||||| ||||||||||| ||||  |||||||||||||  || || ||| ||||||||| | |||||| | |||||||| ||||| |||||||| |||||    
T  42921746 atagtatgatactccacttatgatatatgctgacctaacccaccattcgagatagctagaagaaaatcctaagcatgtgttgcttgcaaacaccttaaaa 42921647  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 10190033 - 10190135
Alignment:
Q  6 gatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacaccctaaa 105  Q
    |||| |||||||||||||| ||||  |||||| |||||| |||||||   |||||| ||| | |||||| ||| |||||| | ||| ||| |||||||||    
T  10190033 gatattacgatactccactgatgatatatgcttacctaactcatcaacaaggatagttagaagaaaatcatgaacatgtgttacttgcaagcaccctaaa 10190132  T
Q  106 act 108  Q
    |||    
T  10190133 act 10190135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 53170983 - 53171080
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaaca 98  Q
    |||| ||||||||||||||||||| ||||  |||||||| ||||  |||||||  |||||||||| | |||||| |||||||||||||||| ||||||    
T  53170983 ctaaagatagtacgatactccactgatgatatatgctgaactaacccatcaattaggatagctagaagaaaatcctgagcatgtgctgcttgcaaaca 53171080  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 56461736 - 56461629
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    |||||||| ||||||||||||| |  |||  |||| ||||||||   ||||||   ||||||||| |||||||||||||||||||||| || |||||| |    
T  56461736 ctaaggatggtacgatactccattggtgatatatgatgacctaaccaatcaattatgatagctagaaaaaaatcttgagcatgtgctgtttgcaaacatc 56461637  T
Q  101 ctaaaact 108  Q
    ||||||||    
T  56461636 ctaaaact 56461629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 82
Target Start/End: Original strand, 32335341 - 32335417
Alignment:
Q  6 gatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcat 82  Q
    ||||||| | ||||||||||||||| |||| ||||||||  ||||||| ||||||||||| | |||||| |||||||    
T  32335341 gatagtatggtactccactaatgacatatgatgacctaatccatcaatagggatagctagaagaaaatcatgagcat 32335417  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 25707013 - 25707095
Alignment:
Q  27 tgacctatgctgacctaaatcatcaatcggga-tagctaggaaaaaatcttgagcatgtgctgcttccaaacaccctaaaact 108  Q
    |||| |||||||||||||  |||||||||||  ||||||| | |||||| | |||||||||||||| |||||| |||||||||    
T  25707013 tgacatatgctgacctaacccatcaatcgggtgtagctagaagaaaatcctcagcatgtgctgcttgcaaacatcctaaaact 25707095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 16958020 - 16958125
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    |||||||||||||  || ||||||  |||| ||||||| ||| |  |||||||  |||||||||| | ||||||| ||||||||||||||| |||| | |    
T  16958020 ctaaggatagtacagtaatccactggtgacatatgctggccttacccatcaatgaggatagctagaagaaaatctagagcatgtgctgcttgcaaatatc 16958119  T
Q  101 ctaaaa 106  Q
    ||||||    
T  16958120 ctaaaa 16958125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 48505820 - 48505716
Alignment:
Q  1 ctaaggatagtacgatactccactaatgacctatgctgacctaaatcatcaatcgggatagctaggaaaaaatcttgagcatgtgctgcttccaaacacc 100  Q
    ||||||||| |||||||||||||  || || |||| ||| ||||  |||||||  |||||||||| |||||||| | | |||||| || || ||||||||    
T  48505820 ctaaggataatacgatactccaccgataacatatgttgatctaacccatcaatatggatagctagaaaaaaatcctaatcatgtgttgtttgcaaacacc 48505721  T
Q  101 ctaaa 105  Q
     ||||    
T  48505720 ttaaa 48505716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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