View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_20 (Length: 357)
Name: NF18693_low_20
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 85 - 339
Target Start/End: Complemental strand, 48962199 - 48961945
Alignment:
| Q |
85 |
tgctggctaggctacccaagcatatattggcctaaatgaaaggtctaaaatgagtctggaatattaatatgctaaaaatgataggtaaggaataaaggct |
184 |
Q |
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| T |
48962199 |
tgctggctaggctacccaagcatatattggcctaaatgaaaggtctaaaatgagtctggaatattaatatgctaaaaatgataggtaaggaataaaggct |
48962100 |
T |
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| Q |
185 |
ttagtctcatagtatttgaataattacatcaacttgaacaaaacacaattttcaatcagaacaaacataaacaacattatcagagttacaaatttatttc |
284 |
Q |
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| T |
48962099 |
ttagtctcatagtatttgaataattacatcaacttgaacaaaacacaattttcaatcagaacaaacataaacaacattatcggagttacaaatttatttc |
48962000 |
T |
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| Q |
285 |
aaaacatcgctatttcaataaacaaataaggagtatgaaccatatatcacaaacc |
339 |
Q |
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| T |
48961999 |
aaaacatcgctatttcaataaacaaataaggagtatgaaccatatatcacaaacc |
48961945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 48962313 - 48962260
Alignment:
| Q |
19 |
atcacataccatagtttctcttagttcctgttccagttttctttcatttccaaa |
72 |
Q |
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| T |
48962313 |
atcacataccatagtttctcttacttcctgttccagttttctttcatttccaaa |
48962260 |
T |
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