View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_22 (Length: 352)
Name: NF18693_low_22
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 40537039 - 40536707
Alignment:
| Q |
7 |
aaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttggttgtccactcatatg |
106 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40537039 |
aaagttcaccaccagcacaaagttccataacaacatgaactgaattttcatcctcataagcacctttaaactcaacaatatttggttgtccactcatatg |
40536940 |
T |
|
| Q |
107 |
ctgcatgatttgaatctccctctttatttcttccttatcaggttcactaacaagattcctcttagaaattgatttgcaagcatatttcaatccagttgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40536939 |
ctgcatgatttgaatctccctctttatttcttccttatcaggttcactaacaagattcctcttagaaattgatttgcaagcatatttcaatccagttgaa |
40536840 |
T |
|
| Q |
207 |
ttctcagtacaaagataagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttacctagaattg |
306 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40536839 |
ttctcagtacaaaggtaagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttacctggaattg |
40536740 |
T |
|
| Q |
307 |
tgtttgtatctgatcttttaacagttggttttg |
339 |
Q |
| |
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||||||||||||| ||||||||||||||||||| |
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| T |
40536739 |
tgtttgtatctgaccttttaacagttggttttg |
40536707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 40532080 - 40531742
Alignment:
| Q |
1 |
tgtcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttggttgtccact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40532080 |
tgtcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttggttgtccact |
40531981 |
T |
|
| Q |
101 |
catatgctgcatgatttgaatctccctctttatttcttccttatcaggttcactaacaagattcctcttagaaattgatttgcaagcatatttcaatcca |
200 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||| ||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
40531980 |
catatgttgcatgatttgaatctccctctttatatcttctttatcagatttactaacaagtttcctcttggaaattgatttgcaagcatatttcaatcca |
40531881 |
T |
|
| Q |
201 |
gttgaattctcagtacaaagataagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttaccta |
300 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40531880 |
gttgaattctcagtacaaagataagtcacaccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttaccaa |
40531781 |
T |
|
| Q |
301 |
gaattgtgtttgtatctgatcttttaacagttggttttg |
339 |
Q |
| |
|
|||||| |||||||| || ||||| |||| ||||||||| |
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|
| T |
40531780 |
gaattgcgtttgtatttggtctttgaacaattggttttg |
40531742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 2478791 - 2478709
Alignment:
| Q |
3 |
tcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaat |
85 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| | || || ||| |||| |||||||||||||||||||| ||||||||| |
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|
| T |
2478791 |
tcaaaaagctcaccaccagcacaaagctccatgataagattaaccgaatgacgatcctcataagcacctttaagctcaacaat |
2478709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 20501398 - 20501115
Alignment:
| Q |
3 |
tcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttggttgtccactca |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||| |
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| T |
20501398 |
tcaaaaagttcaccaccagcacaaagttccataacaacatgaactgaattcctatcctcataagctcctttaaattcaacaatatttggttgaccactca |
20501299 |
T |
|
| Q |
103 |
tatgctgcatgatttgaatctccctctttatttcttccttatcaggttcactaacaagattcctcttagaaattgatttgcaagcatatttcaatccagt |
202 |
Q |
| |
|
||| |||||||| |||||||| |||||||| |||||| |||||| || ||| ||||| |||||||| |||||||| ||||||||||| ||||||||| |
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|
| T |
20501298 |
aatgttgcatgatctgaatctctctctttatatcttccctatcagatttactcacaagtttcctcttggaaattgacttgcaagcataaagcaatccagt |
20501199 |
T |
|
| Q |
203 |
tgaattctcagtacaaagataagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttc |
286 |
Q |
| |
|
||||||||| || || ||| | || || || ||||| ||||| ||||||||||| || |||||||| | ||||||||||||||| |
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| T |
20501198 |
tgaattctcggtgcatagaaacgttactccgaattggcctctacctaattctttacctagtgtgtagaattgtttcacatcttc |
20501115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 221 - 339
Target Start/End: Complemental strand, 19430867 - 19430749
Alignment:
| Q |
221 |
ataagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttacctagaattgtgtttgtatctgat |
320 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
19430867 |
ataagtcacaccaaattgccctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttaccaagaattgtttttgtatttgat |
19430768 |
T |
|
| Q |
321 |
cttttaacagttggttttg |
339 |
Q |
| |
|
|||| | || ||||||||| |
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| T |
19430767 |
ctttgagcaattggttttg |
19430749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 19149811 - 19149691
Alignment:
| Q |
219 |
agataagtcacgccaaattgtcctcttcctaattctttcccaagtgtgtaaatttgtttcacatcttcaaattgtttacctagaattgtgtttgtatctg |
318 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| || |
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| T |
19149811 |
agataagtcacaccaaattgccctcttcctaattctttcccaactgtgtaaatttgtttcacatcttcaaattatttactaagaattgtgtttgtatttg |
19149712 |
T |
|
| Q |
319 |
atcttttaacagttggttttg |
339 |
Q |
| |
|
|||| | | || ||||||||| |
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|
| T |
19149711 |
atctctgagcaattggttttg |
19149691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 55168180 - 55168098
Alignment:
| Q |
12 |
tcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcacctttaaactcaacaatatttggttg |
94 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| || || | |||||||| ||||||||||||||||||||||||| ||||| |
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| T |
55168180 |
tcaccaccagcacaaagttccatcacaagatgcacagagaatctatcctcaaaagcacctttaaactcaacaatattcggttg |
55168098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 41623124 - 41623194
Alignment:
| Q |
3 |
tcaaaaagttcaccaccagcacaaagttccattacaacatgaactgaatttttatcctcataagcaccttt |
73 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| | ||| || | ||||||||||||||||||||| |
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|
| T |
41623124 |
tcaaaaagttcaccaccagcacaaagctccataacaaggttaacagagtgtttatcctcataagcaccttt |
41623194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 8404846 - 8404801
Alignment:
| Q |
55 |
tatcctcataagcacctttaaactcaacaatatttggttgtccact |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| || |||||||||||||| |
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|
| T |
8404846 |
tatcctcataagcacccttgaactcaactatgtttggttgtccact |
8404801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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