View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_24 (Length: 351)
Name: NF18693_low_24
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 23331570 - 23331242
Alignment:
| Q |
12 |
aataatattaagggttaatgtttgaataggttagtgaaagtttcttcgtatttatttcataatataaaaatactttatatttttagcttatcttaattat |
111 |
Q |
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| T |
23331570 |
aataatattaaaggttaatgtttgaataggttagtggaagtttcttcgtatttatttcataatataaaaatactttatatttttagcttatcttaatttt |
23331471 |
T |
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| Q |
112 |
tccttcnnnnnnntacttatctttggaataattaattattagat---ttacccaaatacactctttatggttcatcactttgtatgatttttcacaaaca |
208 |
Q |
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| T |
23331470 |
tccttcaaaaaaatacttatctttggaataattaattattagatgatttacccaaacacactctttatggttcatcactttgtatgatttttcacaaaca |
23331371 |
T |
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| Q |
209 |
tctagctgaaaatcctcattaacgtgtgcacatacattaatttgcttgttccaccannnnnnnnacaaacggctaattatata--attat--aagcaatt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |
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| T |
23331370 |
tctagctgaaaatcctcattaacgtgtgcacatacattaatttgcttgttccaccatttttttt--aaacggctaattatatactattatacaagcaatt |
23331273 |
T |
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| Q |
305 |
gcttagcacgcaatcatatgtatatcatcat |
335 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
23331272 |
gcttagcacgcaatcatatgtatatcatcat |
23331242 |
T |
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