View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18693_low_27 (Length: 319)
Name: NF18693_low_27
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 21055881 - 21056169
Alignment:
| Q |
12 |
atctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21055881 |
atctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaat |
21055980 |
T |
|
| Q |
112 |
gatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctatttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21055981 |
gatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtgctccagtgatgcattgtatacctctatttt |
21056080 |
T |
|
| Q |
212 |
tggagttgcggataagtttacttactgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatagtaaagtagatta |
300 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21056081 |
tggagttgcggataagtttacttactggaagttgcattggagtgtttgagtttaacttgacaatggcatgcttattgtaaagtagatta |
21056169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 26366064 - 26365794
Alignment:
| Q |
11 |
tatctggtttatttcttgctgctttatatatctaattttttatgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaa |
110 |
Q |
| |
|
||||||||||| | ||||||||||||| | ||| ||||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||| |||| |||| |
|
|
| T |
26366064 |
tatctggtttagtccttgctgctttatgtgtctgattttttatgctggcacaatatgatctttactggcatttaccccatttctggtttatctatttgaa |
26365965 |
T |
|
| Q |
111 |
tgatattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatgtactccagtgatgcattgtatacctctattt |
210 |
Q |
| |
|
|||| |||||| ||||||| |||||||||| |||||||||| ||| ||||| | |||| |||||||| | | ||||||||||||||||||||| ||| |
|
|
| T |
26365964 |
tgatgttatttagttgtgtaataatttgttcattgataagtcgatgctttggattatgaatcaacaatgcagt--agtgatgcattgtatacctct-ttt |
26365868 |
T |
|
| Q |
211 |
ttggagttgcggataagtttacttactgcaagcagcattggagtgtttgagtttaacttgacaatggcatgcttatag |
288 |
Q |
| |
|
|||| |||| || ||||||||||| || |||| ||| ||||||||| |||||| |||| |||||||||| ||||| |
|
|
| T |
26365867 |
ttgg-gttgttgacaagtttacttattggaagctgca---gagtgtttgggtttaatttgaaaatggcatgcctatag |
26365794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 26363573 - 26363407
Alignment:
| Q |
14 |
ctggtttatttcttgctgctttatatatctaatttttt-atgccggcactatatgatatttactcgcatttaccccatttctaatttccctatatgaatg |
112 |
Q |
| |
|
|||||||| ||| ||||||||||| | ||| ||||||| |||| |||||||| ||| |||||| ||||||||||||||||| ||| |||| |||||| |
|
|
| T |
26363573 |
ctggtttagttcctgctgctttatgtgtctgatttttttatgctggcactatgcgatctttactggcatttaccccatttctggtttatctatttgaatg |
26363474 |
T |
|
| Q |
113 |
atattatttggttgtgtgataatttgttttttgataagtcactgcattggactgtgaaacaacaatg |
179 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| ||| | ||||| ||||||||||||||| |
|
|
| T |
26363473 |
atattatttggttgtgtaataatttgttctttgataagtaacttctttggattgtgaaacaacaatg |
26363407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University