View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18693_low_31 (Length: 300)
Name: NF18693_low_31
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 21055856 - 21055570
Alignment:
| Q |
1 |
ctcctactctcacaggtctcagatacataatcagaaattgcaacatcaattcagaatgagagtccaaagtattttctgaattttaaaaatttcagtgaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21055856 |
ctcctactctcacaggtctcagatgcataatcagcaattgcaacatcaattcagaatgagagtccaaagtattttctgaattttaaaaatttcagtgaca |
21055757 |
T |
|
| Q |
101 |
cctttaactagtaaaaatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatac |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21055756 |
cctttaaccagtaaaaatctctatgcatgagataattccaccttttttggtgtatttttcaatgctttactgtgagtagtaaaatgcctcattaaaatac |
21055657 |
T |
|
| Q |
201 |
tt-nnnnnnngtctgtcttctaaagcatcaaaaaggagcattttattagatacatcctttcaaaaagtatatatgtactttccctcc |
286 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21055656 |
ttaaaaaaaagtctgtcttctaaagcatcaaaaaggagcattttattagatacatcctttcaaaaagtatatatgtactttccctcc |
21055570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 26363614 - 26363700
Alignment:
| Q |
116 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatactt |
202 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26363614 |
aatctctattcatgtgataattccaccttttttggtggatttttcaattctttattgtgagtagtaaaatgcctcattaaaatactt |
26363700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 26366169 - 26366255
Alignment:
| Q |
116 |
aatctctatgcatgagataattccaccttttttggtgtatttttcaattctttactgtgagtagtaaaatgcctcattaaaatactt |
202 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26366169 |
aatctccatgcatgtgataattccactctttttggtggatatttcaattctttattgtgagtagtaaaatgcctcattaaaatactt |
26366255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University