View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_32 (Length: 296)
Name: NF18693_low_32
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 48472473 - 48472199
Alignment:
| Q |
1 |
gttgcagcaaagtgagtgaattgatagttgagacagtaacgttgtgatacnnnnnnnnnnnnnnnncataggagattgatccaaaaataacttcatctaa |
100 |
Q |
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| T |
48472473 |
gttgcagcaaagtgagtgaattgatagttgagacagtaacgttgtgatacaaaaaaaaaaaa----cataggagattgatccaaaaataacttcatctaa |
48472378 |
T |
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| Q |
101 |
cagtcataacgaaacnnnnnnnnctacagaacaacaaccttcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattactt |
200 |
Q |
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| T |
48472377 |
cagtcataacgaaacaaaaaaaactacagaacaacaaccttcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattactt |
48472278 |
T |
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| Q |
201 |
ggaatgtaattaaatttaggaagatcctcacttccagtttcatcaaataatgagatttcaacattttatgaaccttttg |
279 |
Q |
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| T |
48472277 |
ggaatgtaattaaatttaggaagatcctcacttccagtttcatcaaataatgagatttcaacattttatgaaccttttg |
48472199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 35687416 - 35687554
Alignment:
| Q |
141 |
tcatccgcaattcgagcaagtgaaatattgacattagcattttgatgtatcaaattacttggaatgtaattaaatttaggaagatcctcacttccagttt |
240 |
Q |
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||||||||||| ||||||||||||||||| ||||| ||| |||||| | |||| |||||||||||||||||| |||| ||||||||| |||| |
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| T |
35687416 |
tcatccgcaatccgagcaagtgaaatattaacatttgcactttgatacagtgtgttacatggaatgtaattaaattttggaaaatcctcactgttggttt |
35687515 |
T |
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| Q |
241 |
catcaaataatgagatttcaacattttatgaaccttttg |
279 |
Q |
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| T |
35687516 |
catctaataatgatattttaatgttttcagaaccttttg |
35687554 |
T |
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