View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18693_low_33 (Length: 295)

Name: NF18693_low_33
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18693_low_33
NF18693_low_33
[»] chr3 (27 HSPs)
chr3 (90-198)||(41191568-41191676)
chr3 (68-198)||(8718891-8719020)
chr3 (68-198)||(9070778-9070907)
chr3 (68-198)||(47728947-47729076)
chr3 (90-198)||(34562558-34562666)
chr3 (68-198)||(16276829-16276959)
chr3 (68-198)||(23699867-23699996)
chr3 (68-198)||(23718322-23718451)
chr3 (68-198)||(23736778-23736907)
chr3 (68-198)||(51681351-51681479)
chr3 (90-198)||(51846166-51846274)
chr3 (68-198)||(23756051-23756180)
chr3 (90-179)||(9642990-9643079)
chr3 (97-194)||(28299425-28299522)
chr3 (115-194)||(14743591-14743670)
chr3 (124-194)||(27446139-27446209)
chr3 (115-169)||(38345353-38345407)
chr3 (130-187)||(12974123-12974180)
chr3 (130-194)||(36185837-36185901)
chr3 (130-194)||(47924298-47924362)
chr3 (116-194)||(30794897-30794975)
chr3 (138-188)||(52986832-52986882)
chr3 (144-198)||(53595434-53595488)
chr3 (149-194)||(8060663-8060708)
chr3 (126-167)||(10428400-10428441)
chr3 (134-182)||(16653556-16653604)
chr3 (134-182)||(19012451-19012499)
[»] chr2 (28 HSPs)
chr2 (59-203)||(36636072-36636215)
chr2 (68-201)||(20710544-20710676)
chr2 (90-198)||(41345246-41345354)
chr2 (211-280)||(4962911-4962980)
chr2 (90-198)||(4280992-4281100)
chr2 (90-198)||(43823460-43823570)
chr2 (116-189)||(19246715-19246788)
chr2 (116-189)||(22596422-22596495)
chr2 (116-194)||(20661513-20661591)
chr2 (116-194)||(35126611-35126689)
chr2 (116-189)||(3147204-3147277)
chr2 (116-194)||(24183515-24183593)
chr2 (128-189)||(16111566-16111627)
chr2 (116-189)||(22588436-22588509)
chr2 (130-194)||(37867202-37867266)
chr2 (120-189)||(44915413-44915482)
chr2 (134-194)||(1095304-1095364)
chr2 (130-194)||(15252952-15253016)
chr2 (130-194)||(30777458-30777522)
chr2 (134-194)||(31711558-31711618)
chr2 (130-194)||(42364540-42364604)
chr2 (160-203)||(22588364-22588407)
chr2 (143-198)||(39548427-39548482)
chr2 (124-194)||(20193953-20194023)
chr2 (143-188)||(18297388-18297433)
chr2 (149-194)||(34726747-34726792)
chr2 (155-203)||(28049140-28049188)
chr2 (134-182)||(31783853-31783901)
[»] chr4 (52 HSPs)
chr4 (68-198)||(27765043-27765172)
chr4 (68-198)||(21097896-21098025)
chr4 (59-191)||(48077235-48077366)
chr4 (90-201)||(4169180-4169291)
chr4 (68-203)||(20862321-20862455)
chr4 (68-189)||(50562822-50562942)
chr4 (90-198)||(49137287-49137395)
chr4 (59-194)||(6385655-6385789)
chr4 (68-198)||(18924041-18924170)
chr4 (90-198)||(30358614-30358722)
chr4 (97-194)||(25573554-25573651)
chr4 (90-194)||(30779598-30779702)
chr4 (68-198)||(1728762-1728888)
chr4 (116-198)||(8165880-8165962)
chr4 (116-194)||(8165996-8166074)
chr4 (116-194)||(17109837-17109915)
chr4 (96-198)||(36621136-36621238)
chr4 (90-198)||(9553019-9553128)
chr4 (116-194)||(12722856-12722934)
chr4 (116-194)||(6841938-6842016)
chr4 (116-189)||(36924294-36924367)
chr4 (90-198)||(22180388-22180485)
chr4 (130-194)||(37059847-37059911)
chr4 (124-194)||(6768451-6768521)
chr4 (97-179)||(24687089-24687171)
chr4 (143-212)||(6385781-6385850)
chr4 (130-194)||(8157221-8157285)
chr4 (130-194)||(54895452-54895516)
chr4 (68-135)||(9552120-9552186)
chr4 (115-194)||(53526299-53526378)
chr4 (156-198)||(25573699-25573741)
chr4 (116-194)||(52325152-52325229)
chr4 (115-183)||(8242531-8242599)
chr4 (130-194)||(10374091-10374155)
chr4 (134-194)||(21995718-21995778)
chr4 (130-194)||(31763040-31763104)
chr4 (130-194)||(36309464-36309528)
chr4 (138-198)||(50644480-50644540)
chr4 (130-169)||(562881-562920)
chr4 (143-194)||(806238-806289)
chr4 (68-127)||(9553144-9553202)
chr4 (115-194)||(9813063-9813141)
chr4 (143-198)||(38010494-38010549)
chr4 (130-189)||(42788607-42788666)
chr4 (160-203)||(53526407-53526450)
chr4 (129-194)||(16474951-16475016)
chr4 (160-201)||(31762975-31763016)
chr4 (149-194)||(33883434-33883479)
chr4 (134-194)||(1492720-1492780)
chr4 (130-194)||(2124477-2124541)
chr4 (130-194)||(41025195-41025259)
chr4 (134-194)||(43374495-43374555)
[»] chr1 (39 HSPs)
chr1 (68-198)||(23319166-23319295)
chr1 (68-198)||(31084179-31084308)
chr1 (64-198)||(35197347-35197480)
chr1 (91-198)||(18057573-18057680)
chr1 (68-198)||(21255978-21256107)
chr1 (90-198)||(37642894-37643002)
chr1 (68-198)||(10498030-10498159)
chr1 (68-198)||(30802967-30803096)
chr1 (93-198)||(20506472-20506576)
chr1 (116-194)||(31763823-31763901)
chr1 (118-198)||(45890381-45890461)
chr1 (90-160)||(23277127-23277197)
chr1 (67-198)||(16116645-16116769)
chr1 (116-194)||(9040969-9041047)
chr1 (116-194)||(47693784-47693862)
chr1 (120-194)||(6708365-6708439)
chr1 (118-189)||(32143688-32143759)
chr1 (116-194)||(12796477-12796555)
chr1 (130-194)||(18952518-18952582)
chr1 (115-194)||(14389892-14389971)
chr1 (130-189)||(17811136-17811195)
chr1 (116-194)||(35754617-35754698)
chr1 (143-201)||(28322612-28322670)
chr1 (134-194)||(11354447-11354507)
chr1 (138-198)||(23921145-23921205)
chr1 (130-194)||(32595152-32595216)
chr1 (130-189)||(17893205-17893264)
chr1 (130-189)||(18928831-18928890)
chr1 (143-198)||(31529000-31529055)
chr1 (134-189)||(33157044-33157099)
chr1 (130-189)||(45849241-45849300)
chr1 (143-198)||(51801053-51801108)
chr1 (143-189)||(35197601-35197647)
chr1 (149-198)||(2741509-2741558)
chr1 (134-194)||(1395212-1395272)
chr1 (149-189)||(9628550-9628590)
chr1 (134-194)||(12070546-12070606)
chr1 (155-203)||(19850646-19850694)
chr1 (130-194)||(29945265-29945329)
[»] chr8 (31 HSPs)
chr8 (90-201)||(9853030-9853141)
chr8 (90-195)||(35301788-35301893)
chr8 (68-198)||(23397220-23397349)
chr8 (68-198)||(40022526-40022655)
chr8 (68-198)||(7614596-7614725)
chr8 (68-182)||(35448294-35448407)
chr8 (68-198)||(34647309-34647438)
chr8 (90-182)||(39022770-39022862)
chr8 (68-194)||(24473116-24473241)
chr8 (59-198)||(1672349-1672487)
chr8 (116-194)||(1773207-1773285)
chr8 (97-203)||(15260037-15260143)
chr8 (116-194)||(17656666-17656744)
chr8 (116-189)||(18161342-18161415)
chr8 (116-194)||(27506824-27506902)
chr8 (116-194)||(185929-186007)
chr8 (116-169)||(1672804-1672857)
chr8 (116-188)||(17792810-17792882)
chr8 (68-178)||(45409630-45409738)
chr8 (116-169)||(15809713-15809766)
chr8 (129-182)||(34343309-34343362)
chr8 (128-194)||(2541120-2541185)
chr8 (138-194)||(4835872-4835928)
chr8 (138-194)||(4841317-4841373)
chr8 (130-194)||(10585993-10586057)
chr8 (160-203)||(1773136-1773179)
chr8 (130-181)||(5106667-5106718)
chr8 (127-194)||(32644176-32644243)
chr8 (134-187)||(23940750-23940803)
chr8 (141-189)||(1672183-1672231)
chr8 (134-194)||(6783481-6783541)
[»] chr5 (26 HSPs)
chr5 (68-198)||(23334861-23334990)
chr5 (91-198)||(13363558-13363665)
chr5 (59-198)||(16667969-16668107)
chr5 (97-198)||(18464539-18464640)
chr5 (116-194)||(11376499-11376577)
chr5 (130-194)||(22671844-22671908)
chr5 (120-194)||(15059481-15059555)
chr5 (120-194)||(20134321-20134395)
chr5 (118-194)||(25671138-25671214)
chr5 (130-194)||(7286801-7286865)
chr5 (116-188)||(20696245-20696317)
chr5 (130-194)||(22830636-22830700)
chr5 (130-194)||(23155690-23155754)
chr5 (130-194)||(42746567-42746631)
chr5 (156-203)||(25191868-25191915)
chr5 (143-198)||(35915879-35915934)
chr5 (130-189)||(42746692-42746751)
chr5 (160-198)||(703776-703814)
chr5 (143-181)||(703863-703901)
chr5 (143-201)||(4675487-4675545)
chr5 (143-189)||(8949474-8949520)
chr5 (136-194)||(39086565-39086623)
chr5 (149-198)||(25016468-25016517)
chr5 (134-194)||(33857479-33857539)
chr5 (130-194)||(36864115-36864179)
chr5 (130-194)||(39861712-39861776)
[»] scaffold0097 (1 HSPs)
scaffold0097 (68-198)||(14386-14515)
[»] scaffold0009 (1 HSPs)
scaffold0009 (68-198)||(203063-203192)
[»] chr7 (27 HSPs)
chr7 (68-198)||(30430538-30430667)
chr7 (68-198)||(46024814-46024943)
chr7 (68-198)||(48830376-48830505)
chr7 (90-194)||(27334876-27334980)
chr7 (68-198)||(24360542-24360671)
chr7 (68-198)||(33798498-33798627)
chr7 (90-198)||(32091308-32091416)
chr7 (68-198)||(5758074-5758203)
chr7 (116-194)||(6846697-6846775)
chr7 (59-194)||(39007099-39007230)
chr7 (97-169)||(46346060-46346132)
chr7 (116-194)||(5728728-5728806)
chr7 (116-194)||(31365319-31365397)
chr7 (116-189)||(26945632-26945705)
chr7 (59-194)||(44140381-44140511)
chr7 (130-194)||(43742297-43742361)
chr7 (116-194)||(7843637-7843715)
chr7 (130-194)||(44426646-44426710)
chr7 (116-194)||(31192474-31192552)
chr7 (143-201)||(39007222-39007280)
chr7 (149-198)||(25779493-25779542)
chr7 (130-194)||(6620667-6620731)
chr7 (130-182)||(41065901-41065953)
chr7 (59-113)||(12286016-12286069)
chr7 (143-189)||(32090084-32090130)
chr7 (143-188)||(48691836-48691881)
chr7 (130-182)||(45478374-45478426)
[»] scaffold0194 (1 HSPs)
scaffold0194 (68-195)||(28432-28558)
[»] chr6 (18 HSPs)
chr6 (59-198)||(18611941-18612079)
chr6 (63-198)||(27079652-27079786)
chr6 (67-198)||(29163306-29163436)
chr6 (68-196)||(7765183-7765310)
chr6 (90-194)||(25119362-25119466)
chr6 (115-194)||(7371015-7371094)
chr6 (74-189)||(10588839-10588944)
chr6 (120-194)||(30387122-30387196)
chr6 (134-194)||(22857613-22857673)
chr6 (115-194)||(21384906-21384985)
chr6 (124-194)||(11140382-11140452)
chr6 (127-194)||(10698706-10698774)
chr6 (155-203)||(28129354-28129402)
chr6 (143-198)||(16967560-16967615)
chr6 (59-113)||(18756285-18756338)
chr6 (143-195)||(4338217-4338269)
chr6 (130-194)||(20522780-20522844)
chr6 (130-194)||(26713106-26713170)
[»] scaffold0291 (1 HSPs)
scaffold0291 (116-194)||(9628-9706)
[»] scaffold0031 (1 HSPs)
scaffold0031 (116-178)||(80785-80847)
[»] scaffold0004 (1 HSPs)
scaffold0004 (116-194)||(96047-96125)
[»] scaffold0035 (1 HSPs)
scaffold0035 (116-164)||(75803-75851)
[»] scaffold0102 (1 HSPs)
scaffold0102 (115-194)||(33664-33743)
[»] scaffold0455 (1 HSPs)
scaffold0455 (155-203)||(7941-7989)
[»] scaffold0036 (1 HSPs)
scaffold0036 (130-194)||(108559-108623)
[»] scaffold0023 (1 HSPs)
scaffold0023 (130-194)||(120299-120363)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 41191568 - 41191676
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| ||||||    
T  41191568 caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaatcattttgctgtggaaatggtttttgtgagttgtactccaaaa 41191667  T
Q  190 tcattagat 198  Q
    |||||||||    
T  41191668 tcattagat 41191676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 8719020 - 8718891
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  8719020 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgttgtggaaatggt 8718922  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||||||||||||    
T  8718921 ttctgtgagttgtactccaaaatcattagat 8718891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 9070907 - 9070778
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  9070907 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgttgtggaaatggt 9070809  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||||||||||||    
T  9070808 ttctgtgagttgtactccaaaatcattagat 9070778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 47729076 - 47728947
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  47729076 tttcagagtgttgatttggtt-caatgacagtaacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggt 47728978  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || |||||||||||| |||||| ||||||||    
T  47728977 ttctatgagttgtactccaaaaccattagat 47728947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 34562558 - 34562666
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||| ||||| ||||||||| | |||||||||| ||||||    
T  34562558 caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgtcaaaaccattttgctgtgaaaatggtttatgtgagttgtactccaaaa 34562657  T
Q  190 tcattagat 198  Q
     ||||||||    
T  34562658 ccattagat 34562666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 16276829 - 16276959
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatg-caaaaacgattttactgtggaaatgg 166  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||  ||||| ||||||||||||    
T  16276829 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaaacattttgctgtggaaatgg 16276927  T
Q  167 tttttatgagttgtacaccaaaatcattagat 198  Q
    ||| | |||||||||| ||||||  |||||||    
T  16276928 tttctgtgagttgtactccaaaactattagat 16276959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 23699996 - 23699867
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||| | |||||||||||||    
T  23699996 tttcagagtgttgatttggtt-caatgatagtcacaaatgtccttattatagtatgttttgtataaaattataccaaaaccattctgctgtggaaatggt 23699898  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||  |||||| ||||||||    
T  23699897 ttctgtgagttgtattccaaaaccattagat 23699867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 23718451 - 23718322
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||| | |||||||||||||    
T  23718451 tttcagagtgttgatttggtt-caatgatagtcacaaatgtccttattatagtatgttttgtataaaattataccaaaaccattctgctgtggaaatggt 23718353  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||  |||||| ||||||||    
T  23718352 ttctgtgagttgtattccaaaaccattagat 23718322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 23736907 - 23736778
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||| | |||||||||||||    
T  23736907 tttcagagtgttgatttggtt-caatgatagtcacaaatgtccttattatagtatgttttgtataaaattataccaaaaccattctgctgtggaaatggt 23736809  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||  |||||| ||||||||    
T  23736808 ttctgtgagttgtattccaaaaccattagat 23736778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 51681351 - 51681479
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||| ||||||||||||| ||| ||||||||||||||||||||||||||| ||||  ||||| |||||||||||||    
T  51681351 tttcagagtgttgatttggtt-caatgagagtcacaaatgtc-ttattatagtatgttttgtataaaattatgccaaaatcattttgctgtggaaatggt 51681448  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||| ||||    
T  51681449 ttctgtgagttgtactccaaaaccatgagat 51681479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 51846166 - 51846274
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||  |||| ||||| || ||||||| |||| | | |||||||| ||||||    
T  51846166 caatgacagtcacagatgtccttattatagtatgttttgtataaaattatgcctaaaccattttgctatggaaattgtttctgtcagttgtactccaaaa 51846265  T
Q  190 tcattagat 198  Q
     ||||||||    
T  51846266 ccattagat 51846274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 23756180 - 23756051
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||| ||||||||||||||||| |||| |||||| | ||||||||||||| ||||| |||||  |||||||||||     
T  23756180 tttcagagtgttgatttggtt-caatgatagtcacaaatgtccttattataatatgttctatataaaattatgccaaaaccattttgatgtggaaatggc 23756082  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  23756081 ttctgtgagttgtactccaaaaccattagat 23756051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 9642990 - 9643079
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttg 179  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||  |||||||||| ||| | |||||||    
T  9642990 caatgacagtcacaaatgtccttattatagtatgttttatataaaattatgccaaaaccattttggtgtggaaatgatttctgtgagttg 9643079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 28299425 - 28299522
Alignment:
Q  97 agtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||| | ||||||||||||| | ||||||| || |||||| ||||    
T  28299425 agtcacaaatgtccttattatagtatgttttgtataaaattatgtcaaaaccattttgcagtggaaatggtttctgtgagttggactccaaaaccatt 28299522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 14743670 - 14743591
Alignment:
Q  115 tatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||||  ||| | |||||||||| |||||| ||||    
T  14743670 tatagtatgttttgtataaaattatgccaaaactattttgctgtggaaataatttatgtgagttgtactccaaaaccatt 14743591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 27446139 - 27446209
Alignment:
Q  124 ttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||||| | ||| |||||| |||||| ||||    
T  27446139 ttttgtataaaattatgccaaaaccattttgctgtggaaatggtttctgtgaattgtactccaaaaccatt 27446209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 38345407 - 38345353
Alignment:
Q  115 tatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggttt 169  Q
    ||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||    
T  38345407 tatagtatgttttgtataaaattatgccaaaaccattttgccgtggaaatggttt 38345353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 12974123 - 12974180
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaa 187  Q
    |||||||||||| ||||| ||||| ||||||||||||||| | |||||||||||||||    
T  12974123 ataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtacaccaa 12974180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 36185837 - 36185901
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||  ||||| ||||| ||||||||||||||||| |||||||||| |||||| ||||    
T  36185837 ataaaattatgtcaaaaccatttttctgtggaaatggtttttgtgagttgtactccaaaaccatt 36185901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 47924298 - 47924362
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| ||||||||||||||| | ||||||||||  ||||||||||    
T  47924298 ataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactgcaaaatcatt 47924362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 30794975 - 30794897
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||| ||||||||| | |||| | ||| |||||| ||||    
T  30794975 atagtatgttttgtataaaattatgtcaaaactattttgctgtgaaaatggtttctgtgagctatactccaaaaccatt 30794897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 188
Target Start/End: Original strand, 52986832 - 52986882
Alignment:
Q  138 atgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaa 188  Q
    |||| ||||| ||||||||||||||||||||| |||||||||||| |||||    
T  52986832 atgccaaaaccattttactgtggaaatggtttctatgagttgtactccaaa 52986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 53595488 - 53595434
Alignment:
Q  144 aaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    |||| ||||| ||||||||||||||| | |||||||||| |||||| ||||||||    
T  53595488 aaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccattagat 53595434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 8060708 - 8060663
Alignment:
Q  149 attttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||| ||||||||||||||| |||| ||||||||| |||||||||    
T  8060708 atttttctgtggaaatggtttctatgtgttgtacactaaaatcatt 8060663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 10428400 - 10428441
Alignment:
Q  126 ttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    |||||||||||||||  ||||| |||||||||||||||||||    
T  10428400 ttgtataaaattatgtcaaaaccattttactgtggaaatggt 10428441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 16653604 - 16653556
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtac 182  Q
    |||||||| ||||| ||||| ||||||||||||||| | ||||||||||    
T  16653604 aattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtac 16653556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 19012499 - 19012451
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtac 182  Q
    |||||||| ||||| ||||| ||||||||||||||| | ||||||||||    
T  19012499 aattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtac 19012451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 36636072 - 36636215
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgt 158  Q
    |||| ||| ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| ||||    
T  36636072 tggaaatgatttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaatcattttgctgt 36636170  T
Q  159 ggaaatggtttttatgagttgtacaccaaaatcattagatatatt 203  Q
    ||||||||||||| |||||||||| |||||| |||||||| ||||    
T  36636171 ggaaatggtttttgtgagttgtactccaaaaccattagatgtatt 36636215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 68 - 201
Target Start/End: Complemental strand, 20710676 - 20710544
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||| ||||| |||||||||||||    
T  20710676 tttcagagtgttgatttggtt-caatgacagtcataaatgtccttattatagtatgttttgtataaaattatgtcaaaaccattttgctgtggaaatggt 20710578  T
Q  168 ttttatgagttgtacaccaaaatcattagatata 201  Q
    || | |||||||||| |||||| |||||||||||    
T  20710577 ttctgtgagttgtactccaaaaccattagatata 20710544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 41345246 - 41345354
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||  |||| ||||||||||||||| | |||||||||| ||||||    
T  41345246 caatgacagtcacaaatgtctttattatagtatgttttgtataaaattatgccaaaaccgttttgctgtggaaatggtttatgtgagttgtactccaaaa 41345345  T
Q  190 tcattagat 198  Q
     ||||||||    
T  41345346 ccattagat 41345354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 4962911 - 4962980
Alignment:
Q  211 agtgaatttaattttggaaatgactaatttacacaaaccaaaaatgtgtcctaccaaattgttgtgtttg 280  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4962911 agtgaatttaattttggaaatgactaatttacacaaaccaaaaatgtgtcctaccaaaatgttgtgtttg 4962980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 4280992 - 4281100
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| |||||  |||||||||||||| | |||||| ||| ||||||    
T  4280992 caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgtcaaaaccattttgttgtggaaatggtttctgtgagttatactccaaaa 4281091  T
Q  190 tcattagat 198  Q
     ||||||||    
T  4281092 ccattagat 4281100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 43823570 - 43823460
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtat--gttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaa 187  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||||||||||| ||||  ||||| ||||||||||||||| | |||||||||| ||||    
T  43823570 caatgacagtcacaaatgtccttattatagtatatgttttgtataaaattatgccaaaatcattttgctgtggaaatggtttatgtgagttgtactccaa 43823471  T
Q  188 aatcattagat 198  Q
    ||  |||||||    
T  43823470 aactattagat 43823460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 19246788 - 19246715
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| ||||||    
T  19246788 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaa 19246715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 22596422 - 22596495
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||||| |||| | |||||||||||||||||    
T  22596422 atagtatgttttgtataaaattatgccaaaaccattttattgtggaaatagtttctgtgagttgtacaccaaaa 22596495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 20661513 - 20661591
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||||| || | |||||||||| |||||| ||||    
T  20661513 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggcttctgtgagttgtactccaaaaccatt 20661591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 35126611 - 35126689
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||  ||||||||||||||||| ||| | |||||||||| |||||| ||||    
T  35126611 atagtatgttttgtataaaattatgccaaaatcattttactgtggaaatgatttctgtgagttgtactccaaaaccatt 35126689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 3147204 - 3147277
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||||||||||||| | |||||||||| ||||||    
T  3147204 atagtatgttttgtataaaattatgtcaaaacaattttgctgtggaaatggtttatgtgagttgtactccaaaa 3147277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 24183515 - 24183593
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||  ||||  |||||  |||||||||||||| | |||||||||| |||||||||||    
T  24183515 atagtatgttttgtataaaattatgtcaaaatcattttgttgtggaaatggtttatgtgagttgtactccaaaatcatt 24183593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 16111627 - 16111566
Alignment:
Q  128 gtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||| ||||| ||||||||||| ||||||||| | |||||||||| ||||||    
T  16111627 gtataaaattatgccaaaaccattttactgtgaaaatggtttctgtgagttgtactccaaaa 16111566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 22588436 - 22588509
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||||| ||||  |||||  |||||||||| ||| | |||||||||| ||||||    
T  22588436 atagtatgttttgtataaaattatgccaaaaacattttgttgtggaaatgatttctgtgagttgtactccaaaa 22588509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 37867266 - 37867202
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||  ||||| ||||| ||||||||||||||| | |||||||||| |||||||||||    
T  37867266 ataaaattatgtcaaaactattttgctgtggaaatggtttctgtgagttgtactccaaaatcatt 37867202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 44915413 - 44915482
Alignment:
Q  120 tatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||  ||||| ||||| ||||| ||||||||| | ||| |||||| ||||||    
T  44915413 tatgttttgtataaaattatgtcaaaaccattttgctgtgaaaatggtttctgtgaattgtactccaaaa 44915482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 1095304 - 1095364
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  1095304 aattatgctaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 1095364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 15252952 - 15253016
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||| |||||| || | ||||||||||| | |||||||| |||||| ||||    
T  15252952 ataaaattatgcaaaaaccattttattgggaaaatggtttttgtaagttgtactccaaaaccatt 15253016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 30777458 - 30777522
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||  ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  30777458 ataaaattatgccaaaattattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 30777522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 31711618 - 31711558
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  31711618 aattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 31711558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 42364604 - 42364540
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| ||||| ||||||||| | |||||||||| |||||| ||||    
T  42364604 ataaaattatgccaaaaccattttgctgtgaaaatggtttctgtgagttgtactccaaaaccatt 42364540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 22588364 - 22588407
Alignment:
Q  160 gaaatggtttttatgagttgtacaccaaaatcattagatatatt 203  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||    
T  22588364 gaaatggtttttgtgagttgtactccaaaatcattagatgtatt 22588407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 39548482 - 39548427
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||| ||||| ||||||||||||||| | |||||||||| | |||||||||||||    
T  39548482 aaaaccattttgctgtggaaatggtttctgtgagttgtactctaaaatcattagat 39548427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 20193953 - 20194023
Alignment:
Q  124 ttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||| |||||||||||  ||||| ||||||||||| ||||| ||| | |||||||||| |||||| ||||    
T  20193953 ttttgcataaaattatgtcaaaaccattttactgtgaaaatgatttctgtgagttgtactccaaaaccatt 20194023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 18297388 - 18297433
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaa 188  Q
    ||||| ||||| ||||||||||||||||| |||||||||| |||||    
T  18297388 aaaaccattttgctgtggaaatggtttttgtgagttgtactccaaa 18297433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 34726747 - 34726792
Alignment:
Q  149 attttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||| ||||||||||||||| | |||||||||| |||||||||||    
T  34726747 attttgctgtggaaatggtttctgtgagttgtactccaaaatcatt 34726792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 28049188 - 28049140
Alignment:
Q  155 ctgtggaaatggtttttatgagttgtacaccaaaatcattagatatatt 203  Q
    ||||||||||||||||  |||||||||| |||||| |||||||| ||||    
T  28049188 ctgtggaaatggttttggtgagttgtactccaaaaccattagatgtatt 28049140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 31783901 - 31783853
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtac 182  Q
    |||||||| ||||| ||||| ||||||||||||||| | ||||||||||    
T  31783901 aattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtac 31783853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 27765172 - 27765043
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  27765172 tttcagagtgttgatttggtt-caatgacactcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggt 27765074  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||||||||||||    
T  27765073 ttgtgtgagttgtactccaaaatcattagat 27765043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 21098025 - 21097896
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  21098025 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgatgtggaaatggt 21097927  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  21097926 ttatgtgagttgtactccaaaaccattagat 21097896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 48077235 - 48077366
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgt 158  Q
    |||| ||||||||| | |||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||  ||||| ||||    
T  48077235 tggaaatggtttcagattgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgtcaaaatcattttgctgt 48077333  T
Q  159 ggaaatggtttttatgagttgtacaccaaaatc 191  Q
    ||||||||||| | |||||||||||||||||||    
T  48077334 ggaaatggtttctgtgagttgtacaccaaaatc 48077366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 4169291 - 4169180
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||   |||||    
T  4169291 caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaactattttgctgtggaaatggtttctgtgagttgtagtacaaaa 4169192  T
Q  190 tcattagatata 201  Q
     |||||||||||    
T  4169191 ccattagatata 4169180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 68 - 203
Target Start/End: Complemental strand, 20862455 - 20862321
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||  ||||| |||||||||| ||    
T  20862455 tttcagagtgttgatttggtt-caatgacagtcataaatgtccttattatagtatgttttgtataaaattatgccaaaattattttgctgtggaaatagt 20862357  T
Q  168 ttttatgagttgtacaccaaaatcattagatatatt 203  Q
    || | |||||||||| ||||||||||||||| ||||    
T  20862356 ttatgtgagttgtactccaaaatcattagatgtatt 20862321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 50562822 - 50562942
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||    
T  50562822 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgctgtgtaaatggt 50562920  T
Q  168 ttttatgagttgtacaccaaaa 189  Q
    || | |||||||||| ||||||    
T  50562921 ttctgtgagttgtactccaaaa 50562942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 49137287 - 49137395
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||| | |||||||||| ||||||    
T  49137287 caatgacagtcacaaatgtcctttttatagtatgttttgtataaaattattctaaaaccattttgctgtggaaatggtttatgtgagttgtactccaaaa 49137386  T
Q  190 tcattagat 198  Q
     ||||||||    
T  49137387 ccattagat 49137395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 6385655 - 6385789
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgt 158  Q
    |||| ||||||||| ||| || | |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||| ||||    
T  6385655 tggaaatggtttcagagtattgatttggtt-caatgacagtcacaaatgtccttattatattatgttttgtataaaattatgccaaaaccattttgctgt 6385753  T
Q  159 ggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||| | ||||||| || |||||| ||||    
T  6385754 ggaaatggtttctgtgagttggactccaaaaccatt 6385789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 18924170 - 18924041
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||    
T  18924170 tttcagagtgttgatttggtt-caatcacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgctgtggaaattgt 18924072  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | ||||||||||  ||||| ||||||||    
T  18924071 ttctgtgagttgtacttcaaaaccattagat 18924041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 30358722 - 30358614
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||| ||||| ||||||||||||||| | |||||||||| | ||||    
T  30358722 caatgacagtcacaaatgtccttattatagtaagttttgtataaaattatgtcaaaaccattttgctgtggaaatggtttctgtgagttgtactctaaaa 30358623  T
Q  190 tcattagat 198  Q
     ||||||||    
T  30358622 ccattagat 30358614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 25573554 - 25573651
Alignment:
Q  97 agtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | ||||||| || |||||| ||||    
T  25573554 agtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttggactccaaaaccatt 25573651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 30779598 - 30779702
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||  ||||||||||||||||| ||| | |||||||||  ||||||    
T  30779598 caatgacagtcacaaatgtccttattatagtatgttttgtacaaaattatgccaaaatcattttactgtggaaatgatttatgtgagttgtattccaaaa 30779697  T
Q  190 tcatt 194  Q
     ||||    
T  30779698 ccatt 30779702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 1728762 - 1728888
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||| |||   ||||||||||||||||||||||||  ||||  |||||  ||||||||||||    
T  1728762 tttcagagtgttgatttggtt-caatgacagtcacaaatgtcatta---tagtatgttttgtataaaattatgtcaaaatcattttgttgtggaaatggt 1728857  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    ||||||||||||||| | |||| ||||||||    
T  1728858 ttttatgagttgtactcgaaaaccattagat 1728888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 8165880 - 8165962
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||  |||||| ||||||||    
T  8165880 atagtatgttttgtataaaattatgcaaaaactattttgctgtggaaatggtttctgtgagttgtattccaaaaccattagat 8165962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 8165996 - 8166074
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  8165996 atagtatgttttgtataaaattatgcaaaaactattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 8166074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 17109837 - 17109915
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||||||||    
T  17109837 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaatcatt 17109915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 36621136 - 36621238
Alignment:
Q  96 cagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatta 195  Q
    |||||||||||||||||| |||| |||||||||||||||||||||  ||||| ||||| ||||||||||| ||||| |||||| ||| ||||||  ||||    
T  36621136 cagtcacaaatgtccttattataatatgttttgtataaaattatgtcaaaaccattttgctgtggaaatgatttttgtgagttatactccaaaactatta 36621235  T
Q  196 gat 198  Q
    |||    
T  36621236 gat 36621238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 9553019 - 9553128
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtata-aaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaa 188  Q
    |||||||||| |||||| |||||| ||||||||||||||| || ||||||||| ||||  ||||| ||||||||||||||| | |||||||||| |||||    
T  9553019 caatgacagtaacaaatatccttattatagtatgttttgtttagaaattatgccaaaatcattttgctgtggaaatggtttctgtgagttgtactccaaa 9553118  T
Q  189 atcattagat 198  Q
    | ||||||||    
T  9553119 accattagat 9553128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 12722856 - 12722934
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  12722856 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 12722934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 6841938 - 6842016
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| | | |||||||| |||||| ||||    
T  6841938 atagtatattttgtataaaattatgctaaaaccattttactgtggaaatggtttctgtaagttgtactccaaaaccatt 6842016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 36924367 - 36924294
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||||||||||||| | |||||||||| ||||||    
T  36924367 atagtatgttttgtataaaattatgtcaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaa 36924294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 198
Target Start/End: Original strand, 22180388 - 22180485
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| |||||||||||||||||           ||||| ||||| ||||||||||||||| | |||||||||| ||||||    
T  22180388 caatgacagtcacaaatgtccttattatagtatgttttgtat-----------aaaaccattttgctgtggaaatggtttatgtgagttgtactccaaaa 22180476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 37059847 - 37059911
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| ||||||||||||||||| |||||||||| |||||| ||||    
T  37059847 ataaaattatgccaaaactattttgctgtggaaatggtttttgtgagttgtactccaaaaccatt 37059911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 6768521 - 6768451
Alignment:
Q  124 ttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||  ||||| ||||| ||||| ||||||||| |||||||||||| |||||| ||||    
T  6768521 ttttgtataaaattatgtcaaaactattttgctgtgaaaatggtttctatgagttgtactccaaaaccatt 6768451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 24687171 - 24687089
Alignment:
Q  97 agtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttg 179  Q
    |||||||||||| |||| ||||||||||||||||||||| |||   ||||| ||||| | ||||||||||||| | |||||||    
T  24687171 agtcacaaatgttcttattatagtatgttttgtataaaactatatcaaaactattttgcagtggaaatggtttctgtgagttg 24687089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 6385781 - 6385850
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagatatattaaacagcag 212  Q
    ||||| ||||| ||||||||||||||| |||||||||||| |||||| |||||||| || |||| |||||    
T  6385781 aaaaccattttgctgtggaaatggtttctatgagttgtactccaaaaccattagatgtactaaatagcag 6385850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 8157221 - 8157285
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| |||||  |||||||||||||| | |||||||||| |||||||||||    
T  8157221 ataaaattatgccaaaaccattttgttgtggaaatggtttctgtgagttgtactccaaaatcatt 8157285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 54895516 - 54895452
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  54895516 ataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 54895452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 9552120 - 9552186
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaa 135  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||| ||| |||||    
T  9552120 tttcagagtgtttatttggtt-caatgacagtcacaaatgtccttattatagtatgttctgtttaaaa 9552186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 53526378 - 53526299
Alignment:
Q  115 tatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||||||||| ||||||| ||||| ||||| || || ||||  ||| |||||||||||| |||||| ||||    
T  53526378 tatagtatgttttgtataatattatgccaaaaccattttgctatgaaaataatttctatgagttgtactccaaaaccatt 53526299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 25573699 - 25573741
Alignment:
Q  156 tgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    |||||||||||||||| |||||||||| |||||||||||||||    
T  25573699 tgtggaaatggtttttgtgagttgtactccaaaatcattagat 25573741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 52325229 - 52325152
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||| ||||||||  ||||| ||||| ||||||||||||||| | ||| ||||||  ||||||||||    
T  52325229 atagtatgttttgtattaaattatgtcaaaaccattttgctgtggaaatggtttctgtga-ttgtacttcaaaatcatt 52325152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 8242531 - 8242599
Alignment:
Q  115 tatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtaca 183  Q
    ||||||||||||||||||||||||||  |||||  ||||| |||| |||| |||| | |||||||||||    
T  8242531 tatagtatgttttgtataaaattatgtcaaaactgttttattgtgaaaatagtttatgtgagttgtaca 8242599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 10374155 - 10374091
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| | ||| ||||||||| | |||||||||| |||||||||||    
T  10374155 ataaaattatgccaaaaccattttgccgtgaaaatggtttctgtgagttgtactccaaaatcatt 10374091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 21995778 - 21995718
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  21995778 aattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 21995718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 31763040 - 31763104
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| |||||  |||||||||||||| | |||||||||| |||||| ||||    
T  31763040 ataaaattatgccaaaaccattttggtgtggaaatggtttctgtgagttgtactccaaaaccatt 31763104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 36309528 - 36309464
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||  ||||| ||||| ||||||||||| ||| | |||||||||| |||||||||||    
T  36309528 ataaaattatgtcaaaaccattttgctgtggaaatgatttatgtgagttgtactccaaaatcatt 36309464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 50644540 - 50644480
Alignment:
Q  138 atgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    |||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||||||    
T  50644540 atgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccattagat 50644480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 562881 - 562920
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggttt 169  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  562881 ataaaattatgcaaaaactattttgctgtggaaatggttt 562920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 806238 - 806289
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||| |||||  ||||||||||||||||||| ||||||||| |||||||||    
T  806238 aaaaccattttcatgtggaaatggtttttatgtgttgtacactaaaatcatt 806289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 127
Target Start/End: Original strand, 9553144 - 9553202
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgtttt 127  Q
    ||||| |||||| | |||||| ||||||||||| |||||||||||| |||||||||||||    
T  9553144 tttcagagtgttgatttggtt-caatgacagtcgcaaatgtccttattatagtatgtttt 9553202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 9813063 - 9813141
Alignment:
Q  115 tatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||| |||||  ||||| |||||||  |||||||| ||| | |||||| ||| |||||||||||    
T  9813063 tatagtatgttttgtataaa-ttatgttaaaaccattttacattggaaatgatttctgtgagttatactccaaaatcatt 9813141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 38010549 - 38010494
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||| |||||  |||||||||||||||| |||||||||| |||||| ||||||||    
T  38010549 aaaaccattttgttgtggaaatggtttttgtgagttgtactccaaaaccattagat 38010494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 42788607 - 42788666
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||  ||||  ||||| ||||| ||||||||| |||||||||||||||||||    
T  42788607 ataaaattatgtcaaaatcattttgctgtgaaaatggtttctatgagttgtacaccaaaa 42788666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 53526450 - 53526407
Alignment:
Q  160 gaaatggtttttatgagttgtacaccaaaatcattagatatatt 203  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||    
T  53526450 gaaatggtttctatgagttgtactccaaaatcattagatgtatt 53526407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 16474951 - 16475016
Alignment:
Q  129 tataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||  ||||| |||||  |||||||||||||| | |||||||||| |||||| ||||    
T  16474951 tataaaattatgtcaaaaccattttgttgtggaaatggtttctgtgagttgtactccaaaaccatt 16475016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 31762975 - 31763016
Alignment:
Q  160 gaaatggtttttatgagttgtacaccaaaatcattagatata 201  Q
    |||||||||||| |||||||||| |||||| |||||||||||    
T  31762975 gaaatggtttttgtgagttgtactccaaaaccattagatata 31763016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 33883434 - 33883479
Alignment:
Q  149 attttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||||||||||| | |||||||||| |||||| ||||    
T  33883434 attttactgtggaaatggtttatgtgagttgtactccaaaaccatt 33883479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 1492780 - 1492720
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||  ||||| |||||||| |||||||||||| | |||||||||| |||||| ||||    
T  1492780 aattatgtcaaaaccattttactatggaaatggtttctgtgagttgtactccaaaaccatt 1492720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 2124477 - 2124541
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||  ||||| ||||||||||||||| | |||||| ||| |||||| ||||    
T  2124477 ataaaattatgccaaaatcattttgctgtggaaatggtttctgtgagttttactccaaaaccatt 2124541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 41025195 - 41025259
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||  ||||| |||||||| || |||| |||| | |||||||||| |||||||||||    
T  41025195 ataaaattatgtcaaaactattttactatgtaaatagtttctgtgagttgtactccaaaatcatt 41025259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 43374555 - 43374495
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||| ||||| || |||||||||||| | |||||||||| |||||| ||||    
T  43374555 aattatgccaaaaccattttgctatggaaatggtttatgtgagttgtactccaaaaccatt 43374495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 23319166 - 23319295
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    |||||||||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  23319166 tttcaaagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgttgtggaaatggt 23319264  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  23319265 ttctgtgagttgtactccaaaaccattagat 23319295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 31084308 - 31084179
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  31084308 tttcagagtgttgatttggtt-caataacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggt 31084210  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||||||||||||    
T  31084209 ttatgtgagttgtactccaaaatcattagat 31084179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 35197347 - 35197480
Alignment:
Q  64 atggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaa 163  Q
    ||||||||| |||||||| |||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| || ||  ||||||||    
T  35197347 atggtttcagagtgttaatttggtt-caatgacagtcacaaatgtctttattatagtatgttttgtataaaattatgccaaaaccatcttgttgtggaaa 35197445  T
Q  164 tggtttttatgagttgtacaccaaaatcattagat 198  Q
    |||||| | |||||||||| |||||||||||||||    
T  35197446 tggtttctgtgagttgtactccaaaatcattagat 35197480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 18057680 - 18057573
Alignment:
Q  91 aatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaat 190  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||||    
T  18057680 aatgacagtgacaaatgtccttattatagtatgttttgtataaaattatgctaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaat 18057581  T
Q  191 cattagat 198  Q
    ||||||||    
T  18057580 cattagat 18057573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 21255978 - 21256107
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  21255978 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggt 21256076  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| | ||||||    
T  21256077 ttctgtgagttgtactccaaaacccttagat 21256107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 37643002 - 37642894
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||| ||||||||||||||| | |||||||||| ||||||    
T  37643002 caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgtcaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaa 37642903  T
Q  190 tcattagat 198  Q
     ||||||||    
T  37642902 ccattagat 37642894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 10498159 - 10498030
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||  ||||| ||||| ||||||||||||     
T  10498159 tttcagagtgttgatttggtt-caatgacagtcacaaatgtcattattatagtatgttttgtataaaattatgtcaaaaccattttgctgtggaaatggc 10498061  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    ||  ||||||||||| |||||||||||||||    
T  10498060 ttcaatgagttgtactccaaaatcattagat 10498030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 30803096 - 30802967
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| |||||||||||||    
T  30803096 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaatcattttgctgtggaaatggt 30802998  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| ||| || ||||||||    
T  30802997 ttatgtgagttgtactccataaccattagat 30802967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 20506472 - 20506576
Alignment:
Q  93 tgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatca 192  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| | |||||||||| |||||| ||    
T  20506472 tgacagtcacaaatgtc-ttattatagtatgttttgtttaaaattatgcaaaaaccattttgctgtggaaatggtttatgtgagttgtactccaaaacca 20506570  T
Q  193 ttagat 198  Q
    ||||||    
T  20506571 ttagat 20506576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 31763901 - 31763823
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |||||| ||||    
T  31763901 atagtatgttttgtataaaattatgccaaaaccattttactgtggaaatggtttttgtgagttgtactccaaaaccatt 31763823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 45890461 - 45890381
Alignment:
Q  118 agtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||||||||||||    
T  45890461 agtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggtttatgtgagttgtactccaaaatcattagat 45890381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 23277127 - 23277197
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtgg 160  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  23277127 caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgctgtgg 23277197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 16116769 - 16116645
Alignment:
Q  67 gtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatgg 166  Q
    |||||| |||||| | |||||| |||||||| |||||||||||||||      |||||||||||| ||||||||||||||| |||||  |||| ||||||    
T  16116769 gtttcagagtgttgatttggtt-caatgacaatcacaaatgtcctta------tatgttttgtatcaaattatgcaaaaaccattttgatgtgaaaatgg 16116677  T
Q  167 tttttatgagttgtacaccaaaatcattagat 198  Q
    ||| | |||||||||| |||||||||||||||    
T  16116676 tttctgtgagttgtactccaaaatcattagat 16116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 9040969 - 9041047
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||| |||||| |||||| ||||    
T  9040969 atagtatgttttgtataaaattatgtcaaaaccattttactgtggaaatggtttctatgaattgtactccaaaaccatt 9041047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 47693784 - 47693862
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  47693784 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggtttgtgtgagttgtactccaaaaccatt 47693862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 6708439 - 6708365
Alignment:
Q  120 tatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||  ||||| ||||||||||| ||||| ||| | |||||||||| |||||||||||    
T  6708439 tatgttttgtataaaattatggcaaaaccattttactgtgaaaatgatttctgtgagttgtactccaaaatcatt 6708365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 32143688 - 32143759
Alignment:
Q  118 agtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||||| ||| | ||| |||||| ||||||    
T  32143688 agtatgttttgtataaaattatgtcaaaaccattttactgtggaaatgatttctgtgaattgtactccaaaa 32143759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 12796555 - 12796477
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||  |||| |||| | |||||||||| |||||| ||||    
T  12796555 atagtatgttttgtataaaattatgccaaaaccattttcctgtaaaaatagtttctgtgagttgtactccaaaaccatt 12796477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 18952518 - 18952582
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||  ||||||||||||||||||||| | |||||||||| |||||| ||||    
T  18952518 ataaaattatgccaaaatcattttactgtggaaatggtttctgtgagttgtactccaaaaccatt 18952582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 14389971 - 14389892
Alignment:
Q  115 tatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||| ||||||||||||||||| ||||| ||||| |  |||||||||||| | |||||| ||| |||||| ||||    
T  14389971 tatagtatgatttgtataaaattatgccaaaaccattttgccttggaaatggtttctgtgagttatactccaaaaccatt 14389892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 17811195 - 17811136
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||| ||||| ||||| ||||| ||||||||||| |||||||||| ||||||    
T  17811195 ataaaattatgccaaaaccattttgctgtgaaaatggtttttgtgagttgtactccaaaa 17811136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 35754698 - 35754617
Alignment:
Q  116 atagtatgttttgtataaaattat---gcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||||||||||||||   |||||||| ||||| ||||||||||| ||| | | |||||||| |||||| ||||    
T  35754698 atagtatgttttgtataaaattattatgcaaaaaccattttgctgtggaaatgatttctgtaagttgtactccaaaaccatt 35754617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 28322612 - 28322670
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagatata 201  Q
    ||||| ||||| ||||||||||||||| | |||||||||| |||||| |||||||||||    
T  28322612 aaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccattagatata 28322670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 11354447 - 11354507
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  11354447 aattatgctaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 11354507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 23921145 - 23921205
Alignment:
Q  138 atgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    |||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||||||    
T  23921145 atgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccattagat 23921205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 32595216 - 32595152
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| | ||||||||||||| | |||||||||| |||||| ||||    
T  32595216 ataaaattatgccaaaaccattttgccgtggaaatggtttctgtgagttgtactccaaaaccatt 32595152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 17893205 - 17893264
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||| ||||| |||||  ||||||||| |||||| |||||||||| ||||||    
T  17893205 ataaaattatgccaaaaccattttgttgtggaaatagtttttgtgagttgtactccaaaa 17893264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 18928890 - 18928831
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||| ||||| |||||  |||||||||||||| | |||||||||| ||||||    
T  18928890 ataaaattatgccaaaaccattttgttgtggaaatggtttctgtgagttgtactccaaaa 18928831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 31529000 - 31529055
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||||||    
T  31529000 aaaaccatttttctgtggaaatggtttatgtgagttgtactccaaaaccattagat 31529055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 189
Target Start/End: Complemental strand, 33157099 - 33157044
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||| ||||| ||||| ||||||||||||||| | |||||||||| ||||||    
T  33157099 aattatgccaaaaccattttcctgtggaaatggtttctgtgagttgtactccaaaa 33157044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 45849241 - 45849300
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||  ||||| ||||| ||||||||||||||||| | |||||||| ||||||    
T  45849241 ataaaattatgtcaaaaccattttgctgtggaaatggtttttgttagttgtactccaaaa 45849300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 51801053 - 51801108
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||| ||||| |||||||||||| |||| |||||||||| |||||| ||||||||    
T  51801053 aaaaccattttgctgtggaaatggcttttgtgagttgtactccaaaaccattagat 51801108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 35197601 - 35197647
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    ||||| ||||| ||||||||||||||||| |||||||||| ||||||    
T  35197601 aaaaccattttgctgtggaaatggtttttgtgagttgtactccaaaa 35197647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 2741558 - 2741509
Alignment:
Q  149 attttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||| ||||||||||||||| | |||||||||| |||||| ||||||||    
T  2741558 attttgctgtggaaatggtttctgtgagttgtactccaaaaccattagat 2741509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 1395272 - 1395212
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||  ||||| |||||||||| |||| | |||||||||| |||||||||||    
T  1395272 aattatgccaaaatcattttgctgtggaaatagtttctgtgagttgtactccaaaatcatt 1395212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 9628550 - 9628590
Alignment:
Q  149 attttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    ||||||||||||||||||||| | |||||||||| ||||||    
T  9628550 attttactgtggaaatggtttctgtgagttgtactccaaaa 9628590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 12070546 - 12070606
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||  ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  12070546 aattatgctaaaatcattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 12070606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 19850694 - 19850646
Alignment:
Q  155 ctgtggaaatggtttttatgagttgtacaccaaaatcattagatatatt 203  Q
    ||||||||||||||||  |||||||||| |||||| |||||||| ||||    
T  19850694 ctgtggaaatggttttggtgagttgtactccaaaaccattagatgtatt 19850646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 29945329 - 29945265
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| ||||  ||||||||| | |||||||||| |||||| ||||    
T  29945329 ataaaattatgccaaaaccattttgctgtaaaaatggtttctgtgagttgtactccaaaaccatt 29945265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 9853141 - 9853030
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| ||||||    
T  9853141 caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaatcattttgctgtggaaatggtttttgtgagttgtactccaaaa 9853042  T
Q  190 tcattagatata 201  Q
      ||||||||||    
T  9853041 ctattagatata 9853030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 90 - 195
Target Start/End: Original strand, 35301788 - 35301893
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| ||||||    
T  35301788 caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgctaaaaccattttgctgtggaaatggtttatgtgagttgtactccaaaa 35301887  T
Q  190 tcatta 195  Q
     |||||    
T  35301888 ccatta 35301893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 23397349 - 23397220
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  23397349 tttcagagtgttgatttggtt-caatgacagtcacaaatatccttattatagtatgttttgtataaaattatgccaaaaccattttgatgtggaaatggt 23397251  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  23397250 ttctgtgagttgtactccaaaaccattagat 23397220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 40022526 - 40022655
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    |||||||||| | | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| |||||||||||||    
T  40022526 tttcaaagtgctgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaatcattttgctgtggaaatggt 40022624  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| ||||||  |||||||    
T  40022625 ttctgtgagttgtactccaaaactattagat 40022655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 7614725 - 7614596
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | ||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||   |    
T  7614725 tttcagagtgttgatttggtta-aatgacaatcacaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttactgtgaaaaatat 7614627  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  7614626 ttctgtgagttgtactccaaaaccattagat 7614596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 182
Target Start/End: Complemental strand, 35448407 - 35448294
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| ||||| ||||||||||| |    
T  35448407 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattataatatgttttgtataaaattatgccaaaaccattttgctgtggaaatgat 35448309  T
Q  168 ttttatgagttgtac 182  Q
    || | ||||||||||    
T  35448308 ttctgtgagttgtac 35448294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 34647309 - 34647438
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||  |||| |||||||||||||||||||||| ||||  ||||| |||||||||||||    
T  34647309 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttgttatattatgttttgtataaaattatgccaaaatcattttgctgtggaaatggt 34647407  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | | |||||||| |||||| ||| ||||    
T  34647408 ttatgtaagttgtactccaaaaccatcagat 34647438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 39022862 - 39022770
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtac 182  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||   ||||| ||||| ||||||||||||||| | ||||||||||    
T  39022862 caatgacagtcacaaatgttcttattatagtatgttttgtataaaattatttcaaaactattttgctgtggaaatggtttctgtgagttgtac 39022770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 24473116 - 24473241
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||| ||||||||||| ||| |||||||||||||||||||||| |||  ||||| |||||  ||||||||||||    
T  24473116 tttcagagtgttgatttggtt-caatgacaatcacaaatgtctttattatagtatgttttgtataaaatcatgtcaaaaccattttgatgtggaaatggt 24473214  T
Q  168 ttttatgagttgtacaccaaaatcatt 194  Q
    | || |||||||||| |||||| ||||    
T  24473215 tgttgtgagttgtactccaaaaccatt 24473241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 1672487 - 1672349
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgt 158  Q
    |||| ||||||||| |||||| | |||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||||| |||||  ||||  |||    
T  1672487 tggaaatggtttcagagtgttgatttggtt-caatgacagtcgcaaatgtccttattatattatgttttgtataaaattatgccaaaaccgttttgttgt 1672389  T
Q  159 ggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    | ||||  ||| | |||||||||| | |||| ||||||||    
T  1672388 gtaaattatttctgtgagttgtactctaaaaccattagat 1672349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 1773207 - 1773285
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||  ||||| ||||||||||||||||| |||||||||| |||||| ||||    
T  1773207 atagtatgttttgtataaaattatgccaaaatcattttgctgtggaaatggtttttgtgagttgtactccaaaaccatt 1773285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 15260037 - 15260143
Alignment:
Q  97 agtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattag 196  Q
    |||||||||||| |||| |||| |||||||||||||||||||||| ||||| ||||| ||||| ||||||||| | |||||||||  |||||| | ||||    
T  15260037 agtcacaaatgttcttattatattatgttttgtataaaattatgctaaaaccattttgctgtgaaaatggtttatgtgagttgtaatccaaaaccgttag 15260136  T
Q  197 atatatt 203  Q
    || ||||    
T  15260137 atgtatt 15260143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 17656744 - 17656666
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  17656744 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 17656666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 18161415 - 18161342
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||| |||||| ||||||    
T  18161415 atagtatgttttgtataaaattatgccaaaaccattttactgtggaaatggtttctgtgatttgtactccaaaa 18161342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 27506824 - 27506902
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| | |||||||||| |||||| ||||    
T  27506824 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatagtttctgtgagttgtactccaaaaccatt 27506902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 186007 - 185929
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||| | ||||| |||||  |||||||||||||| | |||||||||| |||||| ||||    
T  186007 atagtatgttttgtataaaattataccaaaaccattttgttgtggaaatggtttctgtgagttgtactccaaaaccatt 185929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 1672857 - 1672804
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggttt 169  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  1672857 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggttt 1672804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 17792810 - 17792882
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaa 188  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||| ||||| ||| | |||||||||| |||||    
T  17792810 atagtatgttttgtataaaattatgccaaaaccattttgctgtgtaaatgatttctgtgagttgtactccaaa 17792882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 45409630 - 45409738
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| ||||| || |||||||||| |||||  |||||| ||||||||||||||||||||||||||  ||||| |||||  |||| ||||| |    
T  45409630 tttcagagtgttgacttgatt-caatgacagttacaaaa-tccttattatagtatgttttgtataaaattatgtcaaaactattttgttgtgaaaatgat 45409727  T
Q  168 ttttatgagtt 178  Q
    |||| ||||||    
T  45409728 ttttgtgagtt 45409738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 15809766 - 15809713
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggttt 169  Q
    |||||||||||||||||||||||| | ||||| ||||| |||||||||||||||    
T  15809766 atagtatgttttgtataaaattataccaaaaccattttgctgtggaaatggttt 15809713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 34343362 - 34343309
Alignment:
Q  129 tataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtac 182  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||    
T  34343362 tataaaattatgccaaaaccattttgctgtggaaatggtttttgtgagttgtac 34343309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 2541120 - 2541185
Alignment:
Q  128 gtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||| ||||| ||||||||||||||| ||||| | |||||||||| |||||| ||||    
T  2541120 gtataaaattatgccaaaaccattttactgtggaaa-ggtttctgtgagttgtactccaaaaccatt 2541185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 4835872 - 4835928
Alignment:
Q  138 atgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||| ||||| ||||| ||||||||||||||| |||||||||||| ||||| |||||    
T  4835872 atgccaaaaccatttttctgtggaaatggtttctatgagttgtactccaaactcatt 4835928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 4841317 - 4841373
Alignment:
Q  138 atgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||| ||||| ||||| ||||||||||||||| |||||||||||| ||||| |||||    
T  4841317 atgccaaaaccatttttctgtggaaatggtttctatgagttgtactccaaactcatt 4841373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 10585993 - 10586057
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| |||||  |||||||||||||| | |||||||||| |||||| ||||    
T  10585993 ataaaattatgccaaaaccattttgttgtggaaatggtttctgtgagttgtactccaaaaccatt 10586057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 203
Target Start/End: Original strand, 1773136 - 1773179
Alignment:
Q  160 gaaatggtttttatgagttgtacaccaaaatcattagatatatt 203  Q
    |||||||||||| |||||||||| ||||||||||||||| ||||    
T  1773136 gaaatggtttttgtgagttgtactccaaaatcattagatgtatt 1773179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 5106667 - 5106718
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgta 181  Q
    |||||||||||  ||||| ||||| ||||||||||||||||| |||||||||    
T  5106667 ataaaattatgtcaaaaccattttgctgtggaaatggtttttgtgagttgta 5106718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 32644176 - 32644243
Alignment:
Q  127 tgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||||  ||||| ||||| ||||||||||| ||| | |||||||||| |||||| ||||    
T  32644176 tgtataaaattatgtcaaaactattttgctgtggaaatgatttctgtgagttgtactccaaaaccatt 32644243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 23940750 - 23940803
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaa 187  Q
    |||||||| ||||| ||||| ||||| ||||||||| |||||||||||| ||||    
T  23940750 aattatgccaaaaccattttgctgtgaaaatggtttctatgagttgtactccaa 23940803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 1672231 - 1672183
Alignment:
Q  141 caaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    ||||||| ||||| ||||||||||||||| | |||||||||| ||||||    
T  1672231 caaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaa 1672183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 6783541 - 6783481
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||| ||||| ||||| |||| |||| | |||||||||| |||||||||||    
T  6783541 aattatgccaaaaccattttgctgtgaaaatagtttctgtgagttgtactccaaaatcatt 6783481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 23334861 - 23334990
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||| ||||| |||||||||||||    
T  23334861 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtacaaaattatgccaaaaccattttgctgtggaaatggt 23334959  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  23334960 ttctgtgagttgtactccaaaaccattagat 23334990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 13363665 - 13363558
Alignment:
Q  91 aatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaat 190  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||||  |||| ||||||||||||||| | ||| |||||| |||||||    
T  13363665 aatgacagtcataaatgtccttattatagtatgttttgtataaaactatgccaaaactgttttgctgtggaaatggtttctgtgaattgtactccaaaat 13363566  T
Q  191 cattagat 198  Q
    ||||||||    
T  13363565 cattagat 13363558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 16667969 - 16668107
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgt 158  Q
    |||| ||||||||| |||||| | |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||  ||||| ||||| | ||    
T  16667969 tggaaatggtttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtgtgttttgtataaaattatgtcaaaaccatttttccgt 16668067  T
Q  159 ggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||||| ||| | |||||||||| | |||| ||||||||    
T  16668068 ggaaatgatttctgtgagttgtactctaaaaccattagat 16668107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 18464539 - 18464640
Alignment:
Q  97 agtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattag 196  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||| |||| |||||||||| |  || |||||| |||||||||||||    
T  18464539 agtcacaaatgtccttattatagtatgttttgtataaaattatgtcaaaaccattttgctgtagaaatggtttctccgacttgtactccaaaatcattag 18464638  T
Q  197 at 198  Q
    ||    
T  18464639 at 18464640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 11376499 - 11376577
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||||||||||| ||||| ||||| ||||||||||||||| | |||||||| | |||||||||||    
T  11376499 atagtatgttttatataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgttctccaaaatcatt 11376577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 22671908 - 22671844
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| ||||||||||||||| |||||||||||| |||||||||||    
T  22671908 ataaaattatgccaaaaccattttgctgtggaaatggtttctatgagttgtactccaaaatcatt 22671844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Complemental strand, 15059555 - 15059481
Alignment:
Q  120 tatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||| |||| | |||||||||| |||||| ||||    
T  15059555 tatgttttgtataaaattatgccaaaaccattttgctgtggaaatagtttctgtgagttgtactccaaaaccatt 15059481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 20134321 - 20134395
Alignment:
Q  120 tatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||| | ||| ||||| ||||||||||| ||| | |||||||||| |||||| ||||    
T  20134321 tatgttttgtataaaattatgccagaaccattttgctgtggaaatgatttatgtgagttgtactccaaaaccatt 20134395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 25671214 - 25671138
Alignment:
Q  118 agtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||||||||| ||||| ||||| | || |||||||||| |||||||||||   ||||||||||    
T  25671214 agtatgttttgtgtaaaattatgccaaaactattttgccgtagaaatggtttctatgagttgtatttcaaaatcatt 25671138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 7286865 - 7286801
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| || |||||||||||| | || ||||||| |||||||||||    
T  7286865 ataaaattatgccaaaactattttgctatggaaatggtttctgtgtgttgtactccaaaatcatt 7286801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 20696245 - 20696317
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaa 188  Q
    |||||||||||||||||||||||||| ||||| ||||| || || ||||| ||| | ||| |||||| |||||    
T  20696245 atagtatgttttgtataaaattatgccaaaaccattttgctctgaaaatgatttatgtgaattgtactccaaa 20696317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 22830700 - 22830636
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||  |||||  |||||||||||||| | |||||||||| |||||||||||    
T  22830700 ataaaattatgccaaaatcatttttttgtggaaatggtttatgtgagttgtactccaaaatcatt 22830636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 23155754 - 23155690
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||| ||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  23155754 ataaaagtatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 23155690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 42746631 - 42746567
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| |||||||||| |||| | |||||||||| |||||| ||||    
T  42746631 ataaaattatgccaaaaccattttgctgtggaaatagtttatgtgagttgtactccaaaaccatt 42746567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 203
Target Start/End: Original strand, 25191868 - 25191915
Alignment:
Q  156 tgtggaaatggtttttatgagttgtacaccaaaatcattagatatatt 203  Q
    |||||||||||||||  ||||||||||||||||| |||||||| ||||    
T  25191868 tgtggaaatggttttggtgagttgtacaccaaaaccattagatgtatt 25191915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 35915934 - 35915879
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||| ||||| | ||||||||||||| | |||||||||| |||||||||||||||    
T  35915934 aaaaccattttgcagtggaaatggtttctgtgagttgtactccaaaatcattagat 35915879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 42746751 - 42746692
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||| ||||| ||||| |||||||||| |||| | |||||||||| ||||||    
T  42746751 ataaaattatgctaaaaccattttgctgtggaaatagtttatgtgagttgtactccaaaa 42746692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 703776 - 703814
Alignment:
Q  160 gaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  703776 gaaatggtttttgtgagttgtactccaaaatcattagat 703814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 703863 - 703901
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgta 181  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  703863 aaaaccattttactgtggaaatggtttttgtgagttgta 703901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 4675545 - 4675487
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagatata 201  Q
    ||||| |||||  |||||||||||||| | |||||||||| |||||| |||||||||||    
T  4675545 aaaacaattttgttgtggaaatggtttatgtgagttgtactccaaaaccattagatata 4675487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 8949520 - 8949474
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    ||||| ||||| ||||||||||||||||| |||||||||| ||||||    
T  8949520 aaaaccattttgctgtggaaatggtttttgtgagttgtactccaaaa 8949474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 39086623 - 39086565
Alignment:
Q  136 ttatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||| ||||| |||||  |||||||||||||||| |||||||||| |||||| ||||    
T  39086623 ttatgccaaaaccattttgttgtggaaatggtttttgtgagttgtactccaaaaccatt 39086565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 25016468 - 25016517
Alignment:
Q  149 attttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||| ||||||||||||||| | |||||| ||| |||||||||||||||    
T  25016468 attttgctgtggaaatggtttctgtgagttatactccaaaatcattagat 25016517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 33857479 - 33857539
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||| |||||  |||||||||||||| | ||| |||||| |||||||||||    
T  33857479 aattatgccaaaaccattttgttgtggaaatggtttctgtgaattgtactccaaaatcatt 33857539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 36864179 - 36864115
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| |||||||||| |||| | |||||||||  |||||| ||||    
T  36864179 ataaaattatgccaaaactattttgctgtggaaatagtttctgtgagttgtattccaaaaccatt 36864115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 39861712 - 39861776
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||  ||||| ||||| ||||||||||| ||| | |||||||||| |||||| ||||    
T  39861712 ataaaattatgtcaaaaccattttgctgtggaaatgatttatgtgagttgtactccaaaaccatt 39861776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 14515 - 14386
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||  ||||| ||||| |||||||||||||    
T  14515 tttcagagtgttgatttggtt-caatgacagtcataaatgtccttattatagtatgttttgtataaaattatgtcaaaaccattttgctgtggaaatggt 14417  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  14416 ttctgtgagttgtactccaaaaccattagat 14386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 203063 - 203192
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||    
T  203063 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaactattttgctgtggaaattgt 203161  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| ||||||  |||||||    
T  203162 ttctgtgagttgtactccaaaactattagat 203192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 30430667 - 30430538
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||| ||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||    
T  30430667 tttcagagtgttgatttggtt-caatgacaatcacaaatgtccttattatagtatgttttatataaaattatgccaaaaccattttgctgtggaaatggt 30430569  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  30430568 ttctgtgagttgtactccaaaaccattagat 30430538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 46024943 - 46024814
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||  ||||| ||||||||||| |    
T  46024943 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccatattatagtatgttttgtataaaattatgccaaaatcattttgctgtggaaatgat 46024845  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    |||| |||||||||| |||||| ||||||||    
T  46024844 ttttgtgagttgtactccaaaaccattagat 46024814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 48830505 - 48830376
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||||  ||||||||| ||    
T  48830505 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtacgttttgtataaaattatgccaaaaccattttgatgtggaaatagt 48830407  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  48830406 ttctgtgagttgtactccaaaaccattagat 48830376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 27334876 - 27334980
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||| | ||||||| || ||||||    
T  27334876 caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaatcattttgctgtggaaatggtttctgtgagttggactccaaaa 27334975  T
Q  190 tcatt 194  Q
     ||||    
T  27334976 ccatt 27334980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 24360671 - 24360542
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||| ||||||||||||||||||| || || ||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  24360671 tttcagagtgttgatttggtt-caataacagtcacaaatgtccttattacagcatgttttgtataaaattatgccaaaaccattttgatgtggaaatggt 24360573  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||| |||||| ||||||||    
T  24360572 ttctgtgagttgtactccaaaaccattagat 24360542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 33798627 - 33798498
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||  ||||| ||||||||||| |    
T  33798627 tttcagagtgttgatttggtt-caatgacagtcacaaatgtccttattatagtatgttttgtataaaattatgtcaaaatcattttgctgtggaaatgat 33798529  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    || | |||||||||  |||||| ||||||||    
T  33798528 ttatgtgagttgtattccaaaaccattagat 33798498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 198
Target Start/End: Complemental strand, 32091416 - 32091308
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||||||||| ||||  ||||| |||||||||| |||| | |||||||||| ||||||    
T  32091416 caatgacagtcacaaatgttcttattatagtacgttttgtataaaattatgccaaaaacattttgctgtggaaatagtttctgtgagttgtactccaaaa 32091317  T
Q  190 tcattagat 198  Q
     ||||||||    
T  32091316 ccattagat 32091308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 5758203 - 5758074
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||  ||||| |||||||||||||    
T  5758203 tttcagagtgttgatttggtt-caatgaaagtcacaaatgtccttattatagtatgttttgtataaaattatgccaaaatcattttgctgtggaaatggt 5758105  T
Q  168 ttttatgagttgtacaccaaaatcattagat 198  Q
    ||    ||||||||| | |||| ||||||||    
T  5758104 ttcagggagttgtactcgaaaaccattagat 5758074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 6846697 - 6846775
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||| |||||||||||    
T  6846697 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggtttctatgagttgtactccaaaatcatt 6846775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 39007099 - 39007230
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgt 158  Q
    |||| |||||||||||||||| | |||||| ||||   |||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||| |  |    
T  39007099 tggaaatggtttcaaagtgttgatttggtt-caat---agtcacaaatatccttattatagtatgttttgtataaaattatgccaaaaccattttgcaat 39007194  T
Q  159 ggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||| | |||||||||| |||||| ||||    
T  39007195 ggaaatggtttatgtgagttgtactccaaaaccatt 39007230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 46346060 - 46346132
Alignment:
Q  97 agtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggttt 169  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||| | |||||||||||||    
T  46346060 agtcacaaatgtccttattatagtatgttttgtataaaattatgtcaaaaccattttgcagtggaaatggttt 46346132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 5728806 - 5728728
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  5728806 atagtatgttttgtataaaattatgtcaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccatt 5728728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 31365397 - 31365319
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| | ||| |||||| |||||| ||||    
T  31365397 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggtttatgtgacttgtactccaaaaccatt 31365319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 26945632 - 26945705
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| | |||||||||| ||||||    
T  26945632 atagtatgttttgtataaaattatgccaaaaccattttgctgtggaaatagtttctgtgagttgtactccaaaa 26945705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 194
Target Start/End: Original strand, 44140381 - 44140511
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgt 158  Q
    |||| ||||||||| |||||| | ||||||  ||| ||||||||||||||||||| |||||||||    |||||||| ||||| ||||  ||||| ||||    
T  44140381 tggaaatggtttcagagtgttgatttggttt-aataacagtcacaaatgtccttattatagtatg----gtataaaactatgccaaaatcattttgctgt 44140475  T
Q  159 ggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||| |||||| || || |||||| ||||    
T  44140476 ggaaatggtttatatgagctggactccaaaaccatt 44140511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 43742361 - 43742297
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||||||||    
T  43742361 ataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaatcatt 43742297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 7843637 - 7843715
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||| ||||  ||| | |||||||||| |||||| ||||    
T  7843637 atagtatgttttgtataaaattatgccaaaaccattttgctgtgaaaataatttctgtgagttgtactccaaaaccatt 7843715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 44426710 - 44426646
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||    
T  44426710 ataaaattatgccaaaaccattttgctgtggaaatggtttatgtgagttgtactccaaaaccatt 44426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 31192474 - 31192552
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||| ||||||||||||| |||  ||||| ||||| ||||||||||||||| | ||| |||||| |||||| ||||    
T  31192474 atagtatattttgtataaaatgatgtcaaaaccattttgctgtggaaatggtttctgtgaattgtactccaaaaccatt 31192552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 39007222 - 39007280
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagatata 201  Q
    ||||| ||||| ||||||||||||||| | |||||||||| |||||| |||||||||||    
T  39007222 aaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccattagatata 39007280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 198
Target Start/End: Complemental strand, 25779542 - 25779493
Alignment:
Q  149 attttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||| ||||||||||||||| |||||||||||| |||||| ||||||||    
T  25779542 attttgctgtggaaatggtttctatgagttgtactccaaaaccattagat 25779493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 6620731 - 6620667
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||  ||||| ||||||||||||||| | || ||||||| |||||| ||||    
T  6620731 ataaaattatgcaaaaatcattttgctgtggaaatggtttctgtgtgttgtaccccaaaaccatt 6620667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 41065901 - 41065953
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtac 182  Q
    |||||||||||| ||||| ||||| ||||||||||||||| | ||||||||||    
T  41065901 ataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttgtac 41065953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 12286069 - 12286016
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtcctta 113  Q
    |||| ||||||||| |||||| | |||||| ||||||||||||||||||||||||    
T  12286069 tggaaatggtttcagagtgttgatttggtt-caatgacagtcacaaatgtcctta 12286016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 32090084 - 32090130
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    ||||| ||||| ||||||||||||||||| |||||||||| ||||||    
T  32090084 aaaaccattttgctgtggaaatggtttttgtgagttgtactccaaaa 32090130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 48691881 - 48691836
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaa 188  Q
    ||||| ||||| ||||||||||||||||| |||||||||| |||||    
T  48691881 aaaaccattttgctgtggaaatggtttttgtgagttgtactccaaa 48691836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 45478426 - 45478374
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtac 182  Q
    |||||||||||| ||||| ||||| ||||| ||||||||| | ||||||||||    
T  45478426 ataaaattatgccaaaactattttgctgtgaaaatggtttctgtgagttgtac 45478374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 28558 - 28432
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||    
T  28558 tttcagagtgttgatttggtt-caatgacagtcacaaatgtcctcattatggtatgttttgtataaaattatgccaaaaccattttgctgtggaaatggt 28460  T
Q  168 ttttatgagttgtacaccaaaatcatta 195  Q
    || | |||||||||| |||||| |||||    
T  28459 ttctgtgagttgtactccaaaaccatta 28432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 18612079 - 18611941
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgt 158  Q
    |||| ||||||||| |||||| | |||||| |||||| | ||||||||||||||| |||||||||||||||||||||| |||  ||||| ||||| ||||    
T  18612079 tggaaatggtttcagagtgttgatttggtt-caatgataatcacaaatgtccttattatagtatgttttgtataaaatcatgtcaaaaccattttgctgt 18611981  T
Q  159 ggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||||||||| | |||||||||| |||||| ||||||||    
T  18611980 ggaaatggtttctgtgagttgtactccaaaaccattagat 18611941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 27079652 - 27079786
Alignment:
Q  63 tatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaa 162  Q
    |||| ||||| |||||||| ||| || |||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||  |||||||    
T  27079652 tatgatttcagagtgttaatttgttt-caatgacagtcacaaatgtccttattctagtttgttttgtataaaattatgcaaaaaccattttgttgtggaa 27079750  T
Q  163 atggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||| ||| | |||||||||| |||||| ||||||||    
T  27079751 atgatttctgtgagttgtactccaaaaccattagat 27079786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 198
Target Start/End: Complemental strand, 29163436 - 29163306
Alignment:
Q  67 gtttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatgg 166  Q
    |||||| |||||| | |||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||  ||||| ||||| |||||||||||     
T  29163436 gtttcacagtgttgatttggtt-caatgaaagtcacaaatgtccttattatagtatgttttgtataaaattatgtcaaaaccattttgctgtggaaatga 29163338  T
Q  167 tttttatgagttgtacaccaaaatcattagat 198  Q
    ||| | ||| |||||| |||||||||||||||    
T  29163337 tttatgtgaattgtactccaaaatcattagat 29163306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 7765310 - 7765183
Alignment:
Q  68 tttcaaagtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggt 167  Q
    ||||| |||||| | |||||| |||| |||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||||  ||||||||||||    
T  7765310 tttcagagtgttgatttggtt-caataacagtcgcaaatgtccttattatagtatgttttgtataaaattatgccaaaaccattttgttgtggaaatggt 7765212  T
Q  168 ttttatgagttgtacaccaaaatcattag 196  Q
    || | |||||||||| |||||| ||||||    
T  7765211 ttctgtgagttgtactccaaaaccattag 7765183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 25119362 - 25119466
Alignment:
Q  90 caatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaa 189  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| | | |||||||| ||||||    
T  25119362 caatgacagtcacaaatgtctttattatagtatgttttgtataaaattatgccaaaaccattttgctgtgtaaatggtttctgtcagttgtactccaaaa 25119461  T
Q  190 tcatt 194  Q
     ||||    
T  25119462 ccatt 25119466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 7371015 - 7371094
Alignment:
Q  115 tatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||||||||||||||||| ||||| ||||| || | |||||||||| | |||||||||| |||||| ||||    
T  7371015 tatagtatgttttgtataaaattatgccaaaactattttgctttagaaatggtttctgtgagttgtactccaaaaccatt 7371094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 10588839 - 10588944
Alignment:
Q  74 agtgttaacttggttacaatgacagtcacaaatgtccttagtatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttat 173  Q
    |||||| |||||||| ||||||||||||||||||||||         ||||||||||||||||||| | ||||| ||||| |||||||||| |||| | |    
T  10588839 agtgttgacttggtt-caatgacagtcacaaatgtcct---------atgttttgtataaaattataccaaaaccattttgctgtggaaatagtttctgt 10588928  T
Q  174 gagttgtacaccaaaa 189  Q
    ||||||||| ||||||    
T  10588929 gagttgtactccaaaa 10588944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 30387122 - 30387196
Alignment:
Q  120 tatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||| ||||  ||||| |||| |||||||||| | |||||||||| |||||| ||||    
T  30387122 tatgttttgtataaaattatgccaaaatcattttgctgtagaaatggtttctgtgagttgtactccaaaaccatt 30387196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 22857613 - 22857673
Alignment:
Q  134 aattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||| ||||| ||||||||||||||||||||| | |||||||||| |||||| ||||    
T  22857613 aattatgccaaaaccattttactgtggaaatggtttctgtgagttgtactccaaaaccatt 22857673  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 194
Target Start/End: Original strand, 21384906 - 21384985
Alignment:
Q  115 tatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||| |||  ||||| ||||| || || ||||||||| | |||||||||| |||||| ||||    
T  21384906 tatagtatgttttgtataaaatcatgtcaaaaccattttgctatgaaaatggtttctgtgagttgtactccaaaaccatt 21384985  T

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Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 11140382 - 11140452
Alignment:
Q  124 ttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||| |||||  |||||||||  ||| | |||||||||| |||||| ||||    
T  11140382 ttttgtataaaattatgcaaaaaccattttgttgtggaaataatttctgtgagttgtactccaaaaccatt 11140452  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 10698706 - 10698774
Alignment:
Q  127 tgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagtt-gtacaccaaaatcatt 194  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||| | |||||| |||| |||||| ||||    
T  10698706 tgtataaaattatgccaaaaccattttgctgtggaaatggtttctgtgagttagtactccaaaaccatt 10698774  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 28129402 - 28129354
Alignment:
Q  155 ctgtggaaatggtttttatgagttgtacaccaaaatcattagatatatt 203  Q
    ||||||||||||||||  |||||||||| ||||||||||||||| ||||    
T  28129402 ctgtggaaatggttttggtgagttgtactccaaaatcattagatgtatt 28129354  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 16967560 - 16967615
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcattagat 198  Q
    ||||| ||||| ||||||||||||||| | |||||||||| |||||| ||||||||    
T  16967560 aaaaccattttgctgtggaaatggtttctgtgagttgtactccaaaaccattagat 16967615  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 18756285 - 18756338
Alignment:
Q  59 tggatatggtttcaaagtgttaacttggttacaatgacagtcacaaatgtcctta 113  Q
    |||| ||||||||| |||||| | |||||| ||||||||||||||||||||||||    
T  18756285 tggaaatggtttcagagtgttgatttggtt-caatgacagtcacaaatgtcctta 18756338  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 4338217 - 4338269
Alignment:
Q  143 aaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatta 195  Q
    ||||| ||||| ||||||||||| ||| |||||||||||| |||||| |||||    
T  4338217 aaaaccattttgctgtggaaatgatttctatgagttgtactccaaaaccatta 4338269  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 20522780 - 20522844
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| |||||  |  ||||||||||| |||||||||||| |||||| ||||    
T  20522780 ataaaattatgccaaaacaattttgtttcggaaatggtttctatgagttgtactccaaaaccatt 20522844  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 26713106 - 26713170
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||| ||||| |||||  |||||||||||||| |  ||| ||||| |||||||||||    
T  26713106 ataaaattatgccaaaaccattttgatgtggaaatggtttctgggagctgtactccaaaatcatt 26713170  T

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Target: scaffold0291 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 9628 - 9706
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||||| |||| | |||||||||| |||||| ||||    
T  9628 atagtatgttttgtataaaattatgccaaaactattttgctgtggaaatagtttatgtgagttgtactccaaaaccatt 9706  T

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Target: scaffold0031 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 80785 - 80847
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagtt 178  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||    
T  80785 atagtatgttttgtataaaattatgcaaaaaccattttactgtagaaatggtttctgtgagtt 80847  T

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Target: scaffold0004 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 96125 - 96047
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    |||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||| | ||| |||||| |||||| ||||    
T  96125 atagtatgttttgtataaaagtatgctaaaaccattttgctgtggaaatggtttctgtgatttgtactccaaaaccatt 96047  T

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Target: scaffold0035 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 75803 - 75851
Alignment:
Q  116 atagtatgttttgtataaaattatgcaaaaacgattttactgtggaaat 164  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||||    
T  75803 atagtatgttttgtataaaattatgctaaaactattttgctgtggaaat 75851  T

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Target: scaffold0102 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 33743 - 33664
Alignment:
Q  115 tatagtatgttttgtataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||||||||||||||||||||||| ||||  ||||| ||||| ||||| ||| | |||||||||  |||||| ||||    
T  33743 tatagtatgttttgtataaaattatgccaaaatcattttgctgtgaaaatgatttctgtgagttgtattccaaaaccatt 33664  T

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Target: scaffold0455 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 203
Target Start/End: Complemental strand, 7989 - 7941
Alignment:
Q  155 ctgtggaaatggtttttatgagttgtacaccaaaatcattagatatatt 203  Q
    ||||||||||||||||  |||||||||| ||||||||||||||| ||||    
T  7989 ctgtggaaatggttttggtgagttgtactccaaaatcattagatgtatt 7941  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 108623 - 108559
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||| || | ||||| ||||| ||||||||||||||| |||| ||||||||| |||| ||||    
T  108623 ataaaataataccaaaaccatttttctgtggaaatggtttctatgtgttgtacactaaaaccatt 108559  T

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Target: scaffold0023 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 120299 - 120363
Alignment:
Q  130 ataaaattatgcaaaaacgattttactgtggaaatggtttttatgagttgtacaccaaaatcatt 194  Q
    ||||||| || | ||||| ||||| ||||||||||||||| |||| ||||||||| |||| ||||    
T  120299 ataaaataataccaaaaccatttttctgtggaaatggtttctatgtgttgtacactaaaaccatt 120363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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