View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_34 (Length: 287)
Name: NF18693_low_34
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 272
Target Start/End: Original strand, 13286778 - 13287036
Alignment:
| Q |
14 |
agaggtggtgggccttgtggtgcttgcaagtttttgagaagaaaatgtgtaaaaggttgcatatttgcaccatattttgattcagaccaaggaacggttc |
113 |
Q |
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| T |
13286778 |
agaggtggtgggccttgtggtgcttgcaagtttttgaggagaaagtgtgtaaaaggttgcatatttgcaccatattttgattcagaccaaggaacggttc |
13286877 |
T |
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| Q |
114 |
attttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgttactctttg |
213 |
Q |
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| T |
13286878 |
attttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgttactctttg |
13286977 |
T |
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| Q |
214 |
ctatgaagctcttgctagggctagagaccctgtttatggttgtgttgctcacatctttg |
272 |
Q |
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| T |
13286978 |
ctatgaagctcttgctagggctagagaccctgtttatggttgtgttgctcacatctttg |
13287036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 28102315 - 28102054
Alignment:
| Q |
17 |
ggtggtgggccttgtggtgcttgcaagtttttgagaagaaaatgtgtaaaaggttg---catatttgcaccatattttgattca---gaccaaggaacgg |
110 |
Q |
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| T |
28102315 |
ggtggtggaccttgtggagcctgcaagtttttgaggagaaagtgtgtgaaaggttgttgcatatttgcaccatattttgagtcatcaggtcaaggaagtg |
28102216 |
T |
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| Q |
111 |
ttcattttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgttactct |
210 |
Q |
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| T |
28102215 |
ctcattttgctgcagttcataaggtttttggtgctagcaatgctgctaaactactcacacgtattccagttcataagcgtcttgatgctgttgttactct |
28102116 |
T |
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| Q |
211 |
ttgctatgaagctcttgctagggctagagaccctgtttatggttgtgttgctcacatctttg |
272 |
Q |
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| T |
28102115 |
ttgctatgaggctcttgctagggctactgaccctgtttatggttgtgttgctcacctctttg |
28102054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 38731399 - 38731487
Alignment:
| Q |
116 |
tttgcagcagttcataaagtgtttggtgctagtaatgcctctaagttactcatgcgtattccagctcataaacgtcttgatgctgttgt |
204 |
Q |
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| T |
38731399 |
tttgcagctattcataaagtgtttggtgctagcaatgtttctaagttgctcttgcatataccagctcatgaacgttgtgaagctgttgt |
38731487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 30903972 - 30904037
Alignment:
| Q |
26 |
ccttgtggtgcttgcaagtttttgagaagaaaatgtgtaaaaggttgcatatttgcaccatatttt |
91 |
Q |
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| T |
30903972 |
ccttgtggagcttgcaaatttttgagaagaaaatgtataagaggttgtgtttttgcaccttatttt |
30904037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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