View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_37 (Length: 274)
Name: NF18693_low_37
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 262
Target Start/End: Original strand, 32590432 - 32590679
Alignment:
| Q |
16 |
aggaaacacgtcgagctgcaattgtttttgcatggttagtgagcagtagtactcctattataattgtcagagcaaattttccccgcaaatttgccatttc |
115 |
Q |
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| T |
32590432 |
aggaaacacgtcgagctgcaattgtttttgcatggttagtgagcagtagtactcctattataattgtcagagcaaattttccccgcaaatttgccatttc |
32590531 |
T |
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| Q |
116 |
tgagg-nnnnnnncataggtctaaaatttggacagtttaatactccatcggtaattaaatatgtggagagnnnnnnnnnnnngttcaatgtttctagtcc |
214 |
Q |
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| T |
32590532 |
tgaggaaaaaaaacataggtctaaaatttggacagtttaatactccatcggtaattaaatatgtggagagaaaaataaaaaagttcaatgtttctagtcc |
32590631 |
T |
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| Q |
215 |
aaaatttggacaaaaacatttgactttttgaatctttttaatttgtat |
262 |
Q |
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| T |
32590632 |
aaaatctggacaaaaacatttgactttttgaatctttttaatttgtat |
32590679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 32594530 - 32594594
Alignment:
| Q |
16 |
aggaaacacgtcgagctgcaattgtttttgcatggttagtgagcagtagtactcctattataatt |
80 |
Q |
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|||||||| |||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
32594530 |
aggaaacatgtcgtgctgcaattgtttttgcattgttagtgagcaatagtactcctattagaatt |
32594594 |
T |
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