View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_40 (Length: 251)
Name: NF18693_low_40
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 218
Target Start/End: Complemental strand, 48754553 - 48754349
Alignment:
| Q |
14 |
aaaatatcccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgaaaatctggattaagtttg |
113 |
Q |
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| T |
48754553 |
aaaatatcccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgtaaatctggattaagtttg |
48754454 |
T |
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| Q |
114 |
gccaaattaagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagcaaggatatcaattgcagtcgtgttg |
213 |
Q |
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| T |
48754453 |
gccaaattaagtaacattgattcacaactacgcaatcatagatccaatccacattaaacaatattttgctaaagcaaggatatcaattgcagtcgtgttg |
48754354 |
T |
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| Q |
214 |
taatt |
218 |
Q |
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||||| |
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| T |
48754353 |
taatt |
48754349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 49053221 - 49053124
Alignment:
| Q |
21 |
cccaccctctatttattccttcagggtttcaataagggttacccagcaaattcagatacacaggtattgcaatgaaaatctggattaagtttggccaa |
118 |
Q |
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| T |
49053221 |
cccaccctctattttttccttcagagtctcaataagggttacccaacaaactcagatacacaggtattgcaatcaatttctgaatcaagtttggccaa |
49053124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 49053051 - 49052999
Alignment:
| Q |
180 |
tgctaaagcaaggatatcaattgcagtcgtgttgtaattaaagtcacgcaaaa |
232 |
Q |
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| T |
49053051 |
tgctaaagcaaggatttcaattgcagtcgcgttgtaattaaattcacgcaaaa |
49052999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 35914736 - 35914688
Alignment:
| Q |
111 |
ttggccaaattaagtaacattgattcacaactacgcaatcatagatcca |
159 |
Q |
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| T |
35914736 |
ttggccaaactaaagaacattgattcacaactaagcaatcaaagatcca |
35914688 |
T |
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