View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18693_low_44 (Length: 235)
Name: NF18693_low_44
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_44 |
 | |
|
| [»] scaffold0189 (1 HSPs) |
| | |
|
| [»] scaffold0246 (1 HSPs) |
| | |
|
| [»] scaffold0048 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 27096742 - 27096944
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27096742 |
aatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgaaatttaactttatctaacaa |
27096841 |
T |
|
| Q |
113 |
ctgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataattgaagaaaagagcgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27096842 |
ctgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacagcaactaaacacacaacaatcataataattgaagaaaagagcgg |
27096941 |
T |
|
| Q |
213 |
caa |
215 |
Q |
| |
|
||| |
|
|
| T |
27096942 |
caa |
27096944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 27181561 - 27181359
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27181561 |
aatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgaaatttaactttatctaacaa |
27181462 |
T |
|
| Q |
113 |
ctgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataattgaagaaaagagcgg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27181461 |
ctgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacagcaactaaacacacaacaatcataataattgaagaaaagagcgg |
27181362 |
T |
|
| Q |
213 |
caa |
215 |
Q |
| |
|
||| |
|
|
| T |
27181361 |
caa |
27181359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 8723660 - 8723495
Alignment:
| Q |
16 |
ataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttgg-ctttaagccaccacaacgaatggaatttaactttatctaacaact |
114 |
Q |
| |
|
|||||||||||||||| ||| | |||| |||||| |||||||||||||| |||| |||||| ||||||||| ||||| |||| ||||| |||| | || |
|
|
| T |
8723660 |
ataaagggttcgaccaacaattctgaggaccgtacacaaaagtggttttattggactttaa-ccaccacaaagaatgatatttcacttttcctaagagct |
8723562 |
T |
|
| Q |
115 |
gttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacaca |
181 |
Q |
| |
|
|||||||||||| || |||| |||| |||||||||||||| ||||||||||| | ||||||||| |
|
|
| T |
8723561 |
tatcaataggtgtttcaatgttattgaacaatctgttgtttctttcattccacactagccaaacaca |
8723495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 1159487 - 1159289
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaa |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1159487 |
aatataaagggttcgaccaccaattttgagaaccgtacacaaaagtggtttttttagctttaagccaccacaacgaatgaaatttaactttatctaacaa |
1159388 |
T |
|
| Q |
113 |
ctgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataattgaagaaaagagcg |
211 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
1159387 |
ctgctcaataggtgttgcagtgtttttgaacaatttgttgtttcgttcatttcacaacaaccaaacacacaacaaccataataattgaagaaaagagcg |
1159289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 38927642 - 38927499
Alignment:
| Q |
72 |
ttaagccaccacaacgaatggaatttaactttatctaacaactgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatca |
171 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |
|
|
| T |
38927642 |
ttaagccaccacaacgaatgaaatttaactttatctaacaactgctcaataggtgttgcagtgtttttgaacaatctgttgttttgttcattccacagca |
38927543 |
T |
|
| Q |
172 |
accaaacacacaaaaatcataataattgaagaaaagagcggcaa |
215 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
38927542 |
accaaacacacaacaaccataataattgaagaaaagagcggcaa |
38927499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 6823018 - 6823179
Alignment:
| Q |
17 |
taaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgt |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||| |||| || || ||||| | |||||| |||||||| |||| |||| ||||||| |||| |
|
|
| T |
6823018 |
taaagggttcgaccaccatctttgagaaccgtacacaaaattggtgttattagcttttaaccaccataacgaatgatattttgctttttctaacagctgt |
6823117 |
T |
|
| Q |
117 |
tcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaac |
178 |
Q |
| |
|
||| |||||| | |||| |||| ||| ||||| || || |||||||| || |||||||| |
|
|
| T |
6823118 |
ataatcggtgtttctatgttcttgaacaacctgttattacgatcattccaaattaaccaaac |
6823179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 31265829 - 31265910
Alignment:
| Q |
17 |
taaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaattta |
98 |
Q |
| |
|
|||||||| ||||||||| ||||||||| | || ||||||||||| || | ||||| |||||| | ||||||||||||||| |
|
|
| T |
31265829 |
taaagggtccgaccaccatctttgagaatcatacacaaaagtggtattatgagcttttagccactaaaacgaatggaattta |
31265910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 11195954 - 11196045
Alignment:
| Q |
16 |
ataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatct |
107 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||| | | |||| || |||||| |||||||||||||| || || || ||||| ||||||||| |
|
|
| T |
11195954 |
ataaagggtccgaccaccatctttgagtaccgaacataaaattgactttgttagctttaagccaccataaagagtgaaattttactttatct |
11196045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 18634570 - 18634661
Alignment:
| Q |
18 |
aaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaa |
109 |
Q |
| |
|
||||||| ||||||||| || ||||| || || ||||| ||||| || || |||||||| ||||| ||| |||| ||||||||||| ||||| |
|
|
| T |
18634570 |
aaagggtccgaccaccatctctgagagccatacacaaacgtggtattattagctttaagtcaccaaaacaaatgaaatttaactttttctaa |
18634661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 52814087 - 52814288
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
52814087 |
aatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaattttactttatcgaataa |
52814186 |
T |
|
| Q |
113 |
ctgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataattgaagaaaagagcgg |
212 |
Q |
| |
|
||| |||||||||||||| |||| |||| |||||||||||||| ||||||||||| ||||||||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
52814187 |
ctgctcaataggtgttgctatgttgttgaacaatctgttgtttctttcattccacaacaaccaaacacacaacaaccataataactgaagaaaagagcgg |
52814286 |
T |
|
| Q |
213 |
ca |
214 |
Q |
| |
|
|| |
|
|
| T |
52814287 |
ca |
52814288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 41879576 - 41879425
Alignment:
| Q |
17 |
taaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgt |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | |||||||||||| || ||||| | ||||||||||| || ||||||||||||||||| | || |
|
|
| T |
41879576 |
taaagggttcgaccaccagttttgagaaccgtacataaaagtggttttattagcttttaatcaccacaacgagtgaaatttaactttatctaagagttgc |
41879477 |
T |
|
| Q |
117 |
tcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccaca |
168 |
Q |
| |
|
||||||| |||| ||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
41879476 |
tcaatagatgtttcagtgttattgaacagtctgttgtttcgttcattccaca |
41879425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 20543688 - 20543779
Alignment:
| Q |
16 |
ataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatct |
107 |
Q |
| |
|
||||||||| ||||||||| ||||| | ||| || | |||| ||| |||||| |||||||||||||| || ||||| ||| ||||||||||| |
|
|
| T |
20543688 |
ataaagggtccgaccaccatctttgggtaccatacataaaattggctttgttagctttaagccaccataaagaatgaaatctaactttatct |
20543779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 52619599 - 52619436
Alignment:
| Q |
18 |
aaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgtt |
117 |
Q |
| |
|
||||||| ||||||||| || ||||| | ||| |||||| |||| || |||||||| |||||||| | |||||| |||||| |||||| || | |||| |
|
|
| T |
52619599 |
aaagggtccgaccaccatctctgagagctgtacacaaaattggtgtttttggcttttagccaccaaagcgaatgaaatttagctttattgaaaagctgta |
52619500 |
T |
|
| Q |
118 |
caataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacaca |
181 |
Q |
| |
|
||| |||||| || |||| |||| || ||||| || ||||||||||||| || ||| ||||| |
|
|
| T |
52619499 |
aaatcggtgtttcaatgttattgaacaccctgttattgcgttcattccacaccagccacacaca |
52619436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 40483766 - 40483961
Alignment:
| Q |
16 |
ataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactg |
115 |
Q |
| |
|
|||| |||| ||||||||| || |||||||||| ||||| |||| || || ||||||||||||| | ||||| |||||||||| |||||| ||||| |
|
|
| T |
40483766 |
ataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaatttaacttgatctaataactg |
40483865 |
T |
|
| Q |
116 |
ttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataattgaagaaaagagcg |
211 |
Q |
| |
|
| |||||| ||| | |||| |||| | |||| || ||||| |||| |||||||||||||||| || || | |||||| ||||||||||| |
|
|
| T |
40483866 |
taaaataggagtttctatgttgttgaataccttgttattacgttctctccagatcaaccaaacacacagaagccaaagtaattggagaaaagagcg |
40483961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 55261605 - 55261680
Alignment:
| Q |
28 |
accaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaacttt |
103 |
Q |
| |
|
||||||| || |||||||| || |||||||||| |||||| ||||| |||||| | | ||||||||||||||||| |
|
|
| T |
55261605 |
accaccatctctgagaaccatacacaaaagtggctttgttagctttcagccacgaataagaatggaatttaacttt |
55261680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 56338023 - 56337966
Alignment:
| Q |
28 |
accaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaa |
85 |
Q |
| |
|
||||||| ||||||||||| || |||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
56338023 |
accaccatctttgagaaccataaacaaaagtggcattgttagcttttagccaccacaa |
56337966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 9690026 - 9690066
Alignment:
| Q |
17 |
taaagggttcgaccaccaactttgagaaccgtatacaaaag |
57 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || ||||||| |
|
|
| T |
9690026 |
taaagggttcgaccaccatctttgagaaccatacacaaaag |
9690066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 7935542 - 7935726
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaa |
112 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
7935542 |
aataaaaagggttcgactaccaactttgagaaccgtacacaaaagtggttttgttggctttaagccaccacaaagaatgaaattttactttatctaacag |
7935641 |
T |
|
| Q |
113 |
ctgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataat |
197 |
Q |
| |
|
|||||||||||||||| |||||||||||| || |||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
7935642 |
ctgttcaataggtgtttcagtgtttttgaacagcctgttgtttcgttcattccacagcaaccaaacgcacaaaagccataataat |
7935726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 21399990 - 21400169
Alignment:
| Q |
20 |
agggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| | ||| ||| |
|
|
| T |
21399990 |
agggttcgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaatttaactttatctaatagctgctca |
21400089 |
T |
|
| Q |
120 |
ataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataattg |
199 |
Q |
| |
|
||||||||| |||||||||||| | ||||||||||||||| ||||| |||| ||| ||||| | || ||||||||||| |
|
|
| T |
21400090 |
ataggtgtttcagtgtttttgaatagtctgttgtttcgttcgttccatatcatccacacacaaagaagccataataattg |
21400169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 47748770 - 47748931
Alignment:
| Q |
20 |
agggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||| | |||||| |
|
|
| T |
47748770 |
agggttcgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaatttaactttatttaatagttgttca |
47748869 |
T |
|
| Q |
120 |
ataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacaca |
181 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |||||||| ||||||| || ||| ||||| |
|
|
| T |
47748870 |
ataggtgtttcagtgtttttgaacaatctgttatttcgttcgttccacaccatccacacaca |
47748931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 13700666 - 13700559
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
13700666 |
aatataaagggttcgaccaccaactttgagaaacgtacacaaaagtgattttgttaactttaagccaccacaagaaatgaaattttactttatctaacag |
13700567 |
T |
|
| Q |
113 |
ctgttcaa |
120 |
Q |
| |
|
||| |||| |
|
|
| T |
13700566 |
ctgctcaa |
13700559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 14306875 - 14307040
Alignment:
| Q |
16 |
ataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactg |
115 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| |||||| || | || || ||||| | |||||| ||| |||| |||| |||| ||||| | ||| |
|
|
| T |
14306875 |
ataaagggttcgaccaccatctctgagaaccgtacacaaaattgatgttattagcttttaaccaccaaaacaaatgatattttgctttttctaatagctg |
14306974 |
T |
|
| Q |
116 |
ttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacaca |
181 |
Q |
| |
|
| ||| || ||| | |||| |||| ||| |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
14306975 |
tataatcggagttactatgttattgaacaacctgttgttacgttcattccaaatcaaccaaacaca |
14307040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 34829022 - 34829114
Alignment:
| Q |
16 |
ataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatcta |
108 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| | |||||||| || || |||||||||||||| || || || ||||||||||| |||| |
|
|
| T |
34829022 |
ataaagggttcgaccaccatctttgagaatcgtacataaaagtggccttattagctttaagccaccaaaaggagtgaaatttaactttttcta |
34829114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 46249393 - 46249229
Alignment:
| Q |
17 |
taaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgt |
116 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||| |||||| |||| || || |||| | |||||| |||||||| |||| |||| ||||||| ||| |
|
|
| T |
46249393 |
taaagggtccgaccaccatctttgggaaccgtacacaaaattggtgttattaacttttaaccaccataacgaatgatattttgctttttctaacagttgt |
46249294 |
T |
|
| Q |
117 |
tcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacaca |
181 |
Q |
| |
|
||| ||||| | |||| |||| ||| ||||| || ||||||||||| |||||||||||||| |
|
|
| T |
46249293 |
atgatatgtgtttctatgttcttgaacaacctgttattacgttcattccaaatcaaccaaacaca |
46249229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 4963968 - 4964116
Alignment:
| Q |
17 |
taaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgt |
116 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||| |||||||| || || || ||||| | ||| || | |||||| ||| ||||||| ||||| | ||| |
|
|
| T |
4963968 |
taaagggtccgaccaccatctctgagaaccgtacacaaaagtagtattctttgcttttaacca-caaagcgaatgaaatctaactttttctaagagttgt |
4964066 |
T |
|
| Q |
117 |
tcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattcca |
166 |
Q |
| |
|
||| |||||| || |||| || | ||| ||| |||||||||||||||| |
|
|
| T |
4964067 |
ataattggtgtttcaatgttattaaacaacctgctgtttcgttcattcca |
4964116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 5688 - 5884
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaa |
112 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||| |||||| |||||||| |||||| |||||||| || || ||| ||||| ||||||||||| | |
|
|
| T |
5688 |
aatatatagggttcgatcaccaactttgagaaccgtacacaaaaatggttttgatggcttcaagccaccgcaccggatgaaattttactttatctaatag |
5787 |
T |
|
| Q |
113 |
ctgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataattgaagaaaagag |
209 |
Q |
| |
|
||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
5788 |
ctgctcaataggtgttgcagtgtttttgaacagtctgttgtttcattcattccacaacaaccaaacacacaaaagccataataattgaagaaaagag |
5884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 5287599 - 5287761
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
5287599 |
aatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaattttactttatcgaataa |
5287698 |
T |
|
| Q |
113 |
ctgttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaacca |
175 |
Q |
| |
|
||| |||||||||||||| |||| |||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
5287699 |
ctgctcaataggtgttgctatgttgttgaacaatctgttgtttctttcattccacaacaacca |
5287761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 40564088 - 40563902
Alignment:
| Q |
22 |
ggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgttcaat |
121 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||| |||| || ||||||||||||||||||||| |||||||||||||||||| ||| | || ||||| |
|
|
| T |
40564088 |
ggtttgaccaccaactttgagaactgtacacaaaaatggtattattggctttaagccaccacaacaaatggaatttaactttatataatagttgctcaat |
40563989 |
T |
|
| Q |
122 |
aggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataattgaagaaaaga |
208 |
Q |
| |
|
||||||| |||||||||||| || | ||||||||||||| ||||||| || ||| ||||| | || ||||||||||| | |||||| |
|
|
| T |
40563988 |
aggtgtttcagtgtttttgaacagtttgttgtttcgttcgttccacaccatccacacacaaagaagccataataattgtaaaaaaga |
40563902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 18959792 - 18959941
Alignment:
| Q |
17 |
taaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgt |
116 |
Q |
| |
|
|||| ||| ||||||||| || | ||| | ||| |||||||| ||||| |||||||| | ||||||||| ||||| | ||||||||| ||||| | |||| |
|
|
| T |
18959792 |
taaaaggtccgaccaccagctcttagatctgtacacaaaagtagttttattggcttttaaccaccacaatgaatgaagtttaactttttctaagagctgt |
18959891 |
T |
|
| Q |
117 |
tcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattcca |
166 |
Q |
| |
|
| |||||||||| || ||| |||| || ||| || |||||||||||||| |
|
|
| T |
18959892 |
ttaataggtgtttcaacgttattgaacagtctattatttcgttcattcca |
18959941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 50729698 - 50729744
Alignment:
| Q |
72 |
ttaagccaccacaacgaatggaatttaactttatctaacaactgttc |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||| || ||||| |
|
|
| T |
50729698 |
ttaagccaccacaacgaatggtatttaactttttctaataattgttc |
50729744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 12248081 - 12247931
Alignment:
| Q |
16 |
ataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactg |
115 |
Q |
| |
|
|||||||| | |||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | ||| |
|
|
| T |
12248081 |
ataaagggctggaccaccaactttgggaaccgaacacaaaagtggttttattggctttaagccaccacaacgaatgaaatttaactttatctaagagctg |
12247982 |
T |
|
| Q |
116 |
ttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattcca |
166 |
Q |
| |
|
|||||||||||| ||||||| |||| || ||||||||||||||||||||| |
|
|
| T |
12247981 |
ctcaataggtgtttcagtgttattgaacagtctgttgtttcgttcattcca |
12247931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 14497755 - 14497906
Alignment:
| Q |
28 |
accaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactgttcaataggtgt |
127 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||| |||| ||| | ||||||||||||||| || ||||||| ||||| | || ||||||||||| |
|
|
| T |
14497755 |
accaccatctctgagaaccgtacacaaaagtggttttattggtttttaaccaccacaacgaatgatatgtaactttttctaaga--tgctcaataggtgt |
14497852 |
T |
|
| Q |
128 |
tgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacaca |
181 |
Q |
| |
|
| || |||| |||| |||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
14497853 |
ttcaatgttattgaacaatctgtggtttcgtttattccacatcagtcaaacaca |
14497906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 31706375 - 31706467
Alignment:
| Q |
17 |
taaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaa |
109 |
Q |
| |
|
|||| ||| ||||||||| || ||||| ||| | ||||| |||| || || ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
31706375 |
taaaaggtccgaccaccatctctgagagccgcacacaaacgtggcattattagcttttagccaccataacgaatggaatttaactttatctaa |
31706467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 33095576 - 33095618
Alignment:
| Q |
18 |
aaagggttcgaccaccaactttgagaaccgtatacaaaagtgg |
60 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
33095576 |
aaagggtccgaccaccatctttgagaaccgtacacaaaagtgg |
33095618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 374831 - 374769
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaa |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
374831 |
aatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaa |
374769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 35378691 - 35378527
Alignment:
| Q |
16 |
ataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactg |
115 |
Q |
| |
|
||||| |||||||||||||| | ||| |||||| ||||||||| |||| ||||| || ||||| ||||| |||| |||| ||||| ||||| | || |
|
|
| T |
35378691 |
ataaacggttcgaccaccaattctgaataccgtacacaaaagtgattttattggcctttagccatcacaaaaaatgatatttcactttttctaagagttg |
35378592 |
T |
|
| Q |
116 |
ttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacaca |
181 |
Q |
| |
|
|||||||||||| || || | |||| |||||||| ||||| ||||||||||| || ||||||||| |
|
|
| T |
35378591 |
atcaataggtgtttcaatg-tattgaacaatctgtagtttctttcattccacaccagccaaacaca |
35378527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 379513 - 379609
Alignment:
| Q |
13 |
aatataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaa |
109 |
Q |
| |
|
|||| ||||||| |||||||||||| |||| | |||| |||||| | | || || || ||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
379513 |
aatacaaagggtccgaccaccaactctgagtatcgtacacaaaattagcgttcttagccttaagccaccataacgaatgaaatttaactttctctaa |
379609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Original strand, 16906941 - 16906981
Alignment:
| Q |
69 |
gctttaagccaccacaacgaatggaatttaactttatctaa |
109 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
16906941 |
gctttaagccaccaaaacgaatgaaatttaactttctctaa |
16906981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 27679730 - 27679646
Alignment:
| Q |
20 |
agggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaacttta |
104 |
Q |
| |
|
||||| ||||||||| | ||||||||||| ||||||||| || || || |||||||||| |||||||| |||||||||||| |
|
|
| T |
27679730 |
agggtccgaccaccatttctgagaaccgtacacaaaagtgacattattagccttaagccaccggaacgaatgaaatttaacttta |
27679646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 21705 - 21900
Alignment:
| Q |
16 |
ataaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaacaactg |
115 |
Q |
| |
|
|||| |||| ||||||||| || |||||||||| ||||| |||| || || ||||||||||||| | ||||| |||||||||| |||||| ||||| |
|
|
| T |
21705 |
ataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaatttaacttgatctaataactg |
21804 |
T |
|
| Q |
116 |
ttcaataggtgttgcagtgtttttgatcaatctgttgtttcgttcattccacatcaaccaaacacacaaaaatcataataattgaagaaaagagcg |
211 |
Q |
| |
|
| |||||| ||| | |||| |||| | |||| || ||||| |||| |||||||||||||||| || || | |||||| ||||||||||| |
|
|
| T |
21805 |
taaaataggagtttctatgttgttgaataccttgttattacgttctctccagatcaaccaaacacacagaagccaaagtaattggagaaaagagcg |
21900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 50990 - 50898
Alignment:
| Q |
17 |
taaagggttcgaccaccaactttgagaaccgtatacaaaagtggttttgttggctttaagccaccacaacgaatggaatttaactttatctaa |
109 |
Q |
| |
|
|||||| | ||||||||| || |||||||| || ||||| |||| ||||| || ||||||||||| || ||||| |||||| | |||||||| |
|
|
| T |
50990 |
taaaggatccgaccaccatctctgagaaccttacacaaatgtggccttgtttgccttaagccaccataaagaatgaaatttagcattatctaa |
50898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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