View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_46 (Length: 229)
Name: NF18693_low_46
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_46 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 31039674 - 31039838
Alignment:
| Q |
46 |
catcaccgcatacctaaaagagcgctgaccaagccgccagcactgatctccagtgaccaagaatcctcgcctttcctaacagctgaaactggcaatctat |
145 |
Q |
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| T |
31039674 |
catcaccgcatacctaaaagagcgctgaccaagccgccagcactgatctccagagaccaagaatcctcgcctttcctaacagctgaaactggcaatctat |
31039773 |
T |
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| Q |
146 |
tagccacaaccaaaagccgttgtctaacaggttttccatcttccctttcatatccattactaaga |
210 |
Q |
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| T |
31039774 |
tagccacaaccaaaagccgttgtctaacaggttttccatcttccctttcatatccattactaaga |
31039838 |
T |
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Target: scaffold0034 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 93688 - 93803
Alignment:
| Q |
53 |
gcatacctaaaagagcgctgaccaagccgccagcactgatctccagtgaccaagaatcctcgcctttcctaacagctgaaactggcaatctattagccac |
152 |
Q |
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||||||||| ||||| ||||| | ||| || ||||||||||| | ||||||||||| || ||| ||||| || || || ||||||||||| ||||| |
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| T |
93688 |
gcatacctaggagagcactgacgaggccacctgcactgatctctaaagaccaagaatcttcacctgtcctatttgccgacacaggcaatctatttgccac |
93787 |
T |
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| Q |
153 |
aaccaaaagccgttgt |
168 |
Q |
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| T |
93788 |
aaccaaaagcctttgt |
93803 |
T |
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