View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_50 (Length: 208)
Name: NF18693_low_50
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 6e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 35089326 - 35089156
Alignment:
| Q |
21 |
tcttctgatcaaaaataaaatcacatgacatttgattggaatgactatctnnnnnnn-tagatcaaatccaaatacatttagtttagttttgatatattt |
119 |
Q |
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| T |
35089326 |
tcttctgatcaaaaataaaatcacatgacatttgattggaatgactatctaaaaaaaatagatcaaatccaaatacatttagtttaattttgatataatt |
35089227 |
T |
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| Q |
120 |
ttggatatcaaatatattaaaatgattgattcatgttcaaaatatatgaagtagtaggttaaatgaacgca |
190 |
Q |
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| T |
35089226 |
ttggatatcaaatatattaaaatgattgattcatgttcaaaatatatgaagtagtaggttaaatgaacgca |
35089156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 35089382 - 35089334
Alignment:
| Q |
21 |
tcttctgatcaaaaataaaatcacatgacatttgattggaatgactatct |
70 |
Q |
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| T |
35089382 |
tcttccgatcaaaaataaaatcacatgacatttga-tggaatgactatct |
35089334 |
T |
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