View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_7 (Length: 469)
Name: NF18693_low_7
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 8069940 - 8070377
Alignment:
| Q |
13 |
aatatatatgatgttgtaggttcttttaagaagaaagcaatgaatgcctcaaacattctcaggaattctttggcaaaaaagggtaggcgaagtagtaagg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8069940 |
aatatatatgatgttgtaggttcttttaagaagaaagcaatgaatgcctcaaacattctcaggaattctttggcaaaaaagggtaggcgaagtagtaagg |
8070039 |
T |
|
| Q |
113 |
tcatgtctgttgaaattgaggatgttcatgatgccgaggagttgaaagctgttgaagagttccgtcaagctcttatatcggaagacctcctccccgagaa |
212 |
Q |
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| T |
8070040 |
tcatgtctgttgaaattgaggatgttcatgatgccgaggagttgaaagctgttgaagagttccgtcaagctcttatatcggaagacctcctccctgagaa |
8070139 |
T |
|
| Q |
213 |
acatgatgactatcatatgatgcttaggttactctctcttcttgtgtttttagtctatcttactattttcaatgaagcctttgctttagagccttatccg |
312 |
Q |
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| T |
8070140 |
acatgatgactatcatatgatgcttaggttactctc---tcttgtgtttttagtctatcatactattttcaatgaagcctttgctttagagccttatccg |
8070236 |
T |
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| Q |
313 |
aatattcatgtatttttcattttatatagattccttaaggccaggaaatttgaaattgataaatcaaagctgatgtggtctgacatgctgaaatggagga |
412 |
Q |
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| T |
8070237 |
aatattcatgtatttttcattttatatagattccttaaggccaggaaatttgaaattgataaatcaaagctgatgtggtctgacatgctgaaatggagga |
8070336 |
T |
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| Q |
413 |
aggaattcggtgctgacactattgcggaggtacttggttgt |
453 |
Q |
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| T |
8070337 |
aggaattcggtgctgacactattgcggaggtacttgattgt |
8070377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 241
Target Start/End: Complemental strand, 32618274 - 32618136
Alignment:
| Q |
103 |
agtagtaaggtcatgtctgttgaaattgaggatgttcatgatgccgaggagttgaaagctgttgaagagttccgtcaagctcttatatcggaagacctcc |
202 |
Q |
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||||||||||| ||||| |||||||| |||||| ||| || || || || |||||||| ||||| || |||||||| |||||||||| ||| || | | |
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| T |
32618274 |
agtagtaaggttatgtcagttgaaatcgaggatattcgcgacgctgatgatttgaaagccgttgatgaattccgtcaggctcttatattggatgaattgc |
32618175 |
T |
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| Q |
203 |
tccccgagaaacatgatgactatcatatgatgcttaggt |
241 |
Q |
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| T |
32618174 |
ttcctgagaagcatgatgactatcatatgctgctcaggt |
32618136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 32617387 - 32617326
Alignment:
| Q |
340 |
agattccttaaggccaggaaatttgaaattgataaatcaaagctgatgtggtctgacatgct |
401 |
Q |
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| T |
32617387 |
agattccttagggcaaggaaatttgaaattgagaaatcaaagcaaatgtggtcagacatgct |
32617326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 428
Target Start/End: Complemental strand, 26671741 - 26671652
Alignment:
| Q |
339 |
tagattccttaaggccaggaaatttgaaattgataaatcaaagctgatgtggtctgacatgctgaaatggaggaaggaattcggtgctga |
428 |
Q |
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| T |
26671741 |
tagatttcttaaagcaaggaagtttgatattgaaaaagcaaagaatatgtgggctgatatgctacaatggaggaaggaatttggtgctga |
26671652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 431
Target Start/End: Complemental strand, 54781520 - 54781444
Alignment:
| Q |
355 |
aggaaatttgaaattgataaatcaaagctgatgtggtctgacatgctgaaatggaggaaggaattcggtgctgacac |
431 |
Q |
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||||||||||| ||||| ||| |||||| |||||| |||||||||| ||||||| | ||| || ||||||||||| |
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| T |
54781520 |
aggaaatttgatattgaaaaagcaaagcatatgtgggctgacatgctacaatggagaagggagtttggtgctgacac |
54781444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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