View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18693_low_8 (Length: 467)
Name: NF18693_low_8
Description: NF18693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18693_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 453
Target Start/End: Complemental strand, 47533287 - 47532855
Alignment:
| Q |
20 |
taactgttgaacaacaaagacaaaaagacaatactcaagtagaaaatgatcctaagaagaacaagaaattaagctgtccatagaaaagaggcaatattgt |
119 |
Q |
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| T |
47533287 |
taactgttgaaccacaaatactaacagaccctactctaggataacatgataattagaagaacaagaaattaagctgtccatagcaaagaggcataattgt |
47533188 |
T |
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| Q |
120 |
tactaaagaatatttagttttatttttcaaaactactaattacttgaaacaataaaataaatttcttcgaaaacttgaaaattgtataatcaaaatgcat |
219 |
Q |
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| T |
47533187 |
tcctaaagaccatttagtttaatttttcaaaactactaattacttgaaacaataaaataaatttcttcgaaaacttgaaaattgtataatcaaaatgcat |
47533088 |
T |
|
| Q |
220 |
ttaatgttctcactatcagttaataccgtaatccacattgcaacagggttctcaaattcactagcaatttaagcagagtataagctgattcatcctgaat |
319 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47533087 |
ttaatgttctcactatcagttaataccgtaattcacattgcaacagggttctcaaattcactagcaatttaaccagagtataagctgattcatcctgaat |
47532988 |
T |
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| Q |
320 |
ttaacnnnnnnnaccatagctgcagttttagttgtttccttttctattgatcactagttttccttccggtactttcactatcagtgtcggtggcttcact |
419 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47532987 |
ttaac-ttttttaccatagctgcagttttagttgtttccttttctattgatcactagttttccttccagtactttcactatcagtgtcggtggcttcact |
47532889 |
T |
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| Q |
420 |
gtcagtgtttgtggcttcactatcggtgtccgtg |
453 |
Q |
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| T |
47532888 |
gtcagtgtttgtggcttcactatcggtgtccgtg |
47532855 |
T |
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