View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_high_1 (Length: 694)
Name: NF18694_high_1
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 18 - 684
Target Start/End: Original strand, 47178095 - 47178760
Alignment:
| Q |
18 |
gtaatttggagtcgatgtttctttgaagttttaatttgcttgtgatatcgaagtattgaaccattgccaaatggtgtgtaagtatttcggaggtatttaa |
117 |
Q |
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| T |
47178095 |
gtaatttggagtcgatgtttctttgaagttttaatttgcttgtgatatcgaagtattgaaccattgccaaatggtgtgtaagtattttggaggtatttaa |
47178194 |
T |
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| Q |
118 |
aatgtgactgttgtagagcttgtatcattgtacaaaaatgtcacgcataacttgtactattttggaggtatttctgtgcatacttgagcttgtacctgac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47178195 |
aatgtgactgttgtagagcttgtatcattgtacaaaaatgtcacgcataacttgtactattttggaggtatttctgtgcatacttgagcttgtacctgac |
47178294 |
T |
|
| Q |
218 |
tgtactcattctactaggtgacacaattgtgatgatttcaaaattgattctttatgaacgatttgaaatctatcttcaaagcatttcatcttcagttgta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47178295 |
tgtactcattctactaggtgacacaattgtgatgatttcaaaattgattctttatgaatgatttgaaatctatcttcaaagcatttcatcttcagttgta |
47178394 |
T |
|
| Q |
318 |
gattaagatttgcaacaaagtacttcaaataaattggtcctatcatgagcaaataattggtctagatgatttgtgttaaacaaattacttcaaagaaatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47178395 |
gattaagatttgcaacaaagtacttcaaataaattggtcctatcattagcaaataattggtctagatgatttgtgttaaataaattacttcaaagaaatt |
47178494 |
T |
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| Q |
418 |
gatccaatgtagtttttccattggatgatttgatcatttgagacgttgaccaaataaaccaaattt----attggtgattttcttggcttctaacaatga |
513 |
Q |
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| T |
47178495 |
gatccaatgtagtttttccattggatgatttgatcatttgagacgttgaccaaataaaccaaatttattaattggtgattttcttcgcttctaacaatga |
47178594 |
T |
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| Q |
514 |
ttttcatggattcggattcacggctgtcataaaaaacctgcggtcacctaatatatatccaccctatgatgaatccagcgctccatatcatttccatctt |
613 |
Q |
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| T |
47178595 |
ttttcatggattcggattcacggctgtcat-aaaaacctgcagtcaccta----atatccaccctatgatgaatccagcgctccatatcatttccatcct |
47178689 |
T |
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| Q |
614 |
aactactaaatgaaaaatcgcaaaatgctagctgatggcaaagctcaaccattgtggtgttggtggtgatg |
684 |
Q |
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| T |
47178690 |
aactaataaatgaaaaatcggaaaatgctagctgatggcaaagctcaaccattgtggtgttggtggtgatg |
47178760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 602
Target Start/End: Complemental strand, 47179050 - 47179016
Alignment:
| Q |
568 |
atatccaccctatgatgaatccagcgctccatatc |
602 |
Q |
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| T |
47179050 |
atatctaccctatgatgaatccagcgctccatatc |
47179016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 27097759 - 27097799
Alignment:
| Q |
231 |
ctaggtgacacaattgtgatgatttcaaaattgattcttta |
271 |
Q |
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| T |
27097759 |
ctaggtgagacagttgtgatgatttcaaaattgattcttta |
27097799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 27180544 - 27180504
Alignment:
| Q |
231 |
ctaggtgacacaattgtgatgatttcaaaattgattcttta |
271 |
Q |
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| T |
27180544 |
ctaggtgagacagttgtgatgatttcaaaattgattcttta |
27180504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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