View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_high_11 (Length: 354)
Name: NF18694_high_11
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 53831990 - 53832316
Alignment:
| Q |
17 |
aaatgatcagtttgtcaaaagttatgttgnnnnnnnnttgattaagggataaagatgaagtatcaacgaacataagacaaattaatgaagaaaaatatga |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
53831990 |
aaatgatcagtttgtcaaaagttatgttgaaaaaaaattgattaagggataaagatgaagtatcaacgaacataagacaaattgatgaagaaaaatatga |
53832089 |
T |
|
| Q |
117 |
aaatcccctaattatttgtttaacatttctttttaatctgctttgattatgctaattgagtttttgtaatctcatgtaaactacaaaatcaaagtcatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53832090 |
aaatcccctaattatttgtttaacatttctttttaatctgctttgattatgctaattgagtttttgtaatctcatgtaaactacaaaatcaaagtcatat |
53832189 |
T |
|
| Q |
217 |
tatgaactccaacacacaaaaccaacgcacatactcaactctattgggtggttaatagtaatttctaactaaatttactctattgccacaattatgaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53832190 |
tatgaactccaacacacaaaaccaacgcacatactcaactctattgggtggttaatagtaatttctaactaaatttactctattgccacaattatgaata |
53832289 |
T |
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| Q |
317 |
ccaatcttggaactaatcgatattcat |
343 |
Q |
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||||||||||||||||| ||||||||| |
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| T |
53832290 |
ccaatcttggaactaattgatattcat |
53832316 |
T |
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