View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18694_high_12 (Length: 317)

Name: NF18694_high_12
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18694_high_12
NF18694_high_12
[»] chr2 (7 HSPs)
chr2 (17-300)||(11998558-11998841)
chr2 (17-216)||(12234136-12234335)
chr2 (17-297)||(12246278-12246557)
chr2 (17-293)||(7541243-7541518)
chr2 (17-290)||(14702426-14702697)
chr2 (37-206)||(12259535-12259707)
chr2 (129-202)||(16662958-16663031)
[»] chr1 (1 HSPs)
chr1 (17-293)||(52549805-52550080)
[»] chr7 (4 HSPs)
chr7 (219-303)||(6788733-6788817)
chr7 (221-297)||(27849023-27849099)
chr7 (223-298)||(17259458-17259533)
chr7 (223-298)||(17267161-17267236)


Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 11998558 - 11998841
Alignment:
Q  17 catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11998558 catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcatactcaattttctaaatttcttctgaggagagctttataat 11998657  T
Q  117 aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg 216  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998658 aatatcctttgactttaaagcatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg 11998757  T
Q  217 gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattcat 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11998758 gaaattctcagcttctttaatctactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattcat 11998841  T

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Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 12234136 - 12234335
Alignment:
Q  17 catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat 116  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||||| ||  |||| ||||| |||| ||||||||||||||||||||||||| |    
T  12234136 catctatttcaacttgctggttattctcatcaaccaaatttgtggcagttgcaatcacagattcaatcttctcaatttcttctgaggagagctttatatt 12234235  T
Q  117 aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg 216  Q
    ||||||| |   ||| |||| ||||||||||||||||||||||  ||||||||||||||| ||||  |||||||||||||||||||||||||||||||||    
T  12234236 aatatccgtcttcttcaaagcatttctcattttgtaaatgtagagatccaatgcattcactgctttagccttccttaggaatttcttgtcttcaatatgg 12234335  T

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Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 12246557 - 12246278
Alignment:
Q  17 catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat 116  Q
    ||||||||||||| |||   || |||||||||| || |||||||||    || |||||||| || || ||||  ||||||| ||| |||||||| | |      
T  12246557 catctatttcaacctgctggtttttctcatcaagcaaatttgtggccacagcaattgcagattcgatcttctcgatttcttgtgaagagagcttcacatc 12246458  T
Q  117 aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg 216  Q
    ||||||||||  |||||||| ||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||||||| ||| ||||||||||| |    
T  12246457 aatatcctttttctttaaagcatttcccattttgtaaatgtagtcatccaaagcattcactgctttggccttccttaggaatctctggtcttcaatat-g 12246359  T
Q  217 gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcatt 297  Q
     ||||||||||| |||||||| || || || |||||||||  ||||| ||| ||||||||||| |||||||||||||||||    
T  12246358 aaaattctcagcctctttaattaatttgtttatttcttcacttgacaacctttctttgtaattagttattgtaatctcatt 12246278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 7541243 - 7541518
Alignment:
Q  17 catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat 116  Q
    ||||||||||||||||    ||||||||||||| || ||| |||||  | || |||| ||| ||||| |||| |||||||||||||||||| || | | |    
T  7541243 catctatttcaacttgttggttattctcatcaatcaaattcgtggccttagcaattgtagattcaatcttctcaatttcttctgaggagagtttcaaatt 7541342  T
Q  117 aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg 216  Q
    |||||| |||  |||||||| | ||| ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||  |    
T  7541343 aatatcatttttctttaaagcagttcccattttgtaaatgtagtcatccaatacattcactgctttggccttccttaggaatttcttgtcttcaata-cg 7541441  T
Q  217 gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatct 293  Q
    | | ||||||||||||| ||| ||||||||||| || |||   ||||  || ||||||| ||||||||| |||||||    
T  7541442 gtatttctcagcttcttgaattaactttttaatatcctcactcgacaatctttctttgtgattggttatcgtaatct 7541518  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 14702426 - 14702697
Alignment:
Q  17 catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat 116  Q
    ||||||||||||| |||   ||||||||||||| || |||||||||    || ||||   | ||||| |||| ||||||   ||||| |||||||||| |    
T  14702426 catctatttcaacctgctggttattctcatcaatcaaatttgtggccacagcaattgacaattcaatcttcttaatttccaatgaggtgagctttatatt 14702525  T
Q  117 aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg 216  Q
    ||||||||||  ||| ||||  |||||||||||||||||| ||| ||||||| |||||||  ||| ||||||||||||||||||| |||||||||||| |    
T  14702526 aatatcctttttcttcaaagcgtttctcattttgtaaatgaagtaatccaattcattcaccactttggccttccttaggaatttcatgtcttcaatat-g 14702624  T
Q  217 gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaa 290  Q
    | ||||||||||||||| ||| | | ||||||||||   |  ||||| ||| ||||||| ||||||||| ||||    
T  14702625 gtaattctcagcttcttgaat-agccttttaatttccaaacttgacaacctttctttgtgattggttatcgtaa 14702697  T

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Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 37 - 206
Target Start/End: Complemental strand, 12259707 - 12259535
Alignment:
Q  37 ttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataataatatcctt-tga--cttta 133  Q
    |||||||||  || || |||||||||   ||| |||||||| ||||| |||| ||||||||||| |||||||||||   |||||||||  | |  |||||    
T  12259707 ttattctcactaagcaaatttgtggccactgcaattgcagattcaatcttctcaatttcttctgtggagagctttacgttaatatcctcctcattcttta 12259608  T
Q  134 aagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtc 206  Q
    ||| ||||||||||||||||||||| ||||||||||||||||| ||||  |  ||| ||||||||||||||||    
T  12259607 aagcatttctcattttgtaaatgtaatcatccaatgcattcactgctttagatttctttaggaatttcttgtc 12259535  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 16663031 - 16662958
Alignment:
Q  129 ctttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttct 202  Q
    ||||| || ||| |||| |||||||||| ||||||| ||||||||||   | | ||||||||||||||||||||    
T  16663031 ctttagagcattcctcaatttgtaaatgcagtcatctaatgcattcattaccttggccttccttaggaatttct 16662958  T

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Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 52550080 - 52549805
Alignment:
Q  17 catctatttcaacttgccacttattctcatcaaccagatttgtggcagttgcgattgcagactcaattttctaaatttcttctgaggagagctttataat 116  Q
    |||||||||||||||||   || |||| |||||||| ||| |||||   ||| |||||||| || || |||| ||||||||||||||||||||| | | |    
T  52550080 catctatttcaacttgctggtttttctgatcaaccaaattcgtggccactgcaattgcagattcgatcttctcaatttcttctgaggagagcttcaaatt 52549981  T
Q  117 aatatcctttgactttaaagtatttctcattttgtaaatgtagtcatccaatgcattcacagcttcggccttccttaggaatttcttgtcttcaatatgg 216  Q
    |||||||| |  |||||||| |||||| ||||||||||||||||||||||||||||||   | ||  ||||||||||||||||||||||||||||||       
T  52549980 aatatcctctttctttaaagcatttctgattttgtaaatgtagtcatccaatgcattccatggtttagccttccttaggaatttcttgtcttcaata-ca 52549882  T
Q  217 gaaattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatct 293  Q
    | ||||||||||||||| ||| || |||||||| || |||  ||||| ||| ||||||| |||||| ||||||||||    
T  52549881 gtaattctcagcttcttgaattaattttttaatgtcctcacttgacaacctttctttgtgattggtaattgtaatct 52549805  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 6788733 - 6788817
Alignment:
Q  219 aattctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattcatatt 303  Q
    |||||||||||||||||||||| ||||||||||| |||    ||| ||| ||||||||||||||||| |||||||||||||||||    
T  6788733 aattctcagcttctttaatcaattttttaatttcgtcactacacaacctttctttgtaattggttatggtaatctcattcatatt 6788817  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 27849099 - 27849023
Alignment:
Q  221 ttctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcatt 297  Q
    ||||||||||||| |||||||||||||||||||||   ||| | ||| ||||||||||| || ||| ||||||||||    
T  27849099 ttctcagcttcttgaatcaactttttaatttcttctgttgatagcctttctttgtaattagtaattataatctcatt 27849023  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 17259458 - 17259533
Alignment:
Q  223 ctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattc 298  Q
    ||||||||||||||||||  ||||||||| |||| | || | |||  |||||| ||||||||||||||||||||||    
T  17259458 ctcagcttctttaatcaatcttttaatttgttcagccgagaaccttcctttgtcattggttattgtaatctcattc 17259533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 17267161 - 17267236
Alignment:
Q  223 ctcagcttctttaatcaactttttaatttcttcatctgacatcctatctttgtaattggttattgtaatctcattc 298  Q
    |||||||||||||| |||  ||||||||| |||| | || | |||  |||||| ||||||||||||||||||||||    
T  17267161 ctcagcttctttaaccaatcttttaatttgttcagccgataaccttcctttgtcattggttattgtaatctcattc 17267236  T

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