View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18694_high_14 (Length: 289)

Name: NF18694_high_14
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18694_high_14
NF18694_high_14
[»] chr5 (13 HSPs)
chr5 (5-179)||(31886355-31886530)
chr5 (8-232)||(24763980-24764203)
chr5 (8-105)||(17336347-17336445)
chr5 (35-105)||(15175204-15175275)
chr5 (15-105)||(36737433-36737524)
chr5 (8-105)||(1406213-1406311)
chr5 (36-105)||(9118834-9118904)
chr5 (36-105)||(21639017-21639087)
chr5 (8-105)||(31850003-31850101)
chr5 (29-105)||(20691113-20691190)
chr5 (29-105)||(37333902-37333979)
chr5 (29-105)||(37657380-37657457)
chr5 (29-76)||(24624845-24624893)
[»] chr3 (14 HSPs)
chr3 (98-272)||(19345365-19345537)
chr3 (8-104)||(17058439-17058536)
chr3 (29-105)||(11414479-11414555)
chr3 (8-105)||(34668344-34668446)
chr3 (5-86)||(9830294-9830376)
chr3 (36-105)||(37183079-37183149)
chr3 (36-105)||(54606429-54606499)
chr3 (29-105)||(11056558-11056635)
chr3 (29-105)||(22130395-22130472)
chr3 (29-105)||(23308937-23309014)
chr3 (29-105)||(33115232-33115309)
chr3 (8-76)||(54403589-54403658)
chr3 (5-76)||(13623205-13623277)
chr3 (38-105)||(47794659-47794727)
[»] chr8 (11 HSPs)
chr8 (64-272)||(25276238-25276443)
chr8 (8-105)||(44284328-44284426)
chr8 (57-105)||(42198539-42198587)
chr8 (15-105)||(30990799-30990890)
chr8 (35-105)||(32904224-32904295)
chr8 (8-105)||(17564669-17564767)
chr8 (8-105)||(40791047-40791145)
chr8 (9-105)||(3075945-3076042)
chr8 (36-84)||(25485432-25485481)
chr8 (29-105)||(25597774-25597851)
chr8 (56-105)||(31847003-31847052)
[»] scaffold0166 (1 HSPs)
scaffold0166 (8-232)||(6477-6700)
[»] chr1 (10 HSPs)
chr1 (8-86)||(49129653-49129732)
chr1 (8-78)||(1114860-1114931)
chr1 (36-108)||(1845855-1845928)
chr1 (29-105)||(41322194-41322271)
chr1 (8-76)||(45737332-45737401)
chr1 (29-116)||(25813009-25813097)
chr1 (8-105)||(36512036-36512133)
chr1 (36-105)||(36605406-36605476)
chr1 (64-105)||(35383627-35383668)
chr1 (29-76)||(52505973-52506021)
[»] chr6 (18 HSPs)
chr6 (8-115)||(31882487-31882595)
chr6 (8-105)||(2092315-2092413)
chr6 (29-105)||(34280014-34280091)
chr6 (8-82)||(12767584-12767659)
chr6 (8-105)||(21802582-21802680)
chr6 (8-105)||(4126465-4126561)
chr6 (29-105)||(14873696-14873773)
chr6 (35-78)||(32130962-32131005)
chr6 (36-105)||(188439-188509)
chr6 (35-84)||(9240878-9240928)
chr6 (8-105)||(4101102-4101198)
chr6 (29-105)||(9241538-9241615)
chr6 (29-105)||(11523476-11523553)
chr6 (60-105)||(11793504-11793549)
chr6 (29-105)||(12025515-12025592)
chr6 (29-105)||(34709916-34709993)
chr6 (29-76)||(27923748-27923796)
chr6 (57-105)||(28023559-28023607)
[»] scaffold0001 (1 HSPs)
scaffold0001 (8-111)||(185162-185267)
[»] chr4 (17 HSPs)
chr4 (8-89)||(21037313-21037395)
chr4 (29-105)||(6232420-6232497)
chr4 (36-105)||(796382-796452)
chr4 (8-105)||(6711231-6711329)
chr4 (8-105)||(8138321-8138419)
chr4 (36-105)||(23269167-23269237)
chr4 (36-117)||(55068830-55068912)
chr4 (29-105)||(615433-615510)
chr4 (29-105)||(7165395-7165472)
chr4 (29-105)||(12250673-12250750)
chr4 (29-105)||(13392750-13392827)
chr4 (29-105)||(13395889-13395966)
chr4 (29-105)||(46096118-46096195)
chr4 (29-105)||(46138619-46138696)
chr4 (29-105)||(47029816-47029893)
chr4 (29-76)||(23308826-23308874)
chr4 (29-76)||(23309477-23309525)
[»] chr7 (20 HSPs)
chr7 (29-105)||(29824028-29824105)
chr7 (36-115)||(6184641-6184720)
chr7 (110-242)||(553327-553458)
chr7 (8-105)||(2790079-2790177)
chr7 (8-77)||(36688837-36688907)
chr7 (36-105)||(2146035-2146105)
chr7 (8-105)||(11639895-11639993)
chr7 (63-105)||(23232868-23232910)
chr7 (8-105)||(35782833-35782931)
chr7 (36-105)||(40401557-40401627)
chr7 (29-105)||(317956-318033)
chr7 (29-105)||(2146873-2146950)
chr7 (29-105)||(6185331-6185408)
chr7 (29-105)||(6191847-6191924)
chr7 (29-105)||(25606923-25607000)
chr7 (36-84)||(25607617-25607666)
chr7 (9-105)||(32867243-32867340)
chr7 (29-105)||(42813577-42813654)
chr7 (29-84)||(25945-26001)
chr7 (34-105)||(40344440-40344512)
[»] chr2 (12 HSPs)
chr2 (8-115)||(22298228-22298336)
chr2 (8-105)||(7939325-7939423)
chr2 (8-105)||(37199577-37199675)
chr2 (4-84)||(3515446-3515527)
chr2 (8-116)||(11796788-11796896)
chr2 (29-105)||(20893202-20893279)
chr2 (29-105)||(34248061-34248138)
chr2 (29-105)||(35899817-35899894)
chr2 (8-76)||(40769347-40769416)
chr2 (29-76)||(16111165-16111213)
chr2 (57-105)||(35954022-35954070)
chr2 (36-84)||(38911338-38911386)
[»] scaffold0068 (1 HSPs)
scaffold0068 (8-105)||(59259-59357)
[»] scaffold0043 (1 HSPs)
scaffold0043 (8-75)||(67744-67812)
[»] scaffold0451 (1 HSPs)
scaffold0451 (35-105)||(7856-7927)
[»] scaffold2113 (1 HSPs)
scaffold2113 (36-105)||(725-795)
[»] scaffold0361 (1 HSPs)
scaffold0361 (36-115)||(16474-16554)
[»] scaffold0289 (1 HSPs)
scaffold0289 (5-76)||(4022-4094)
[»] scaffold0115 (1 HSPs)
scaffold0115 (29-76)||(33343-33391)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 31886355 - 31886530
Alignment:
Q  5 ggggtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaat 103  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  31886355 ggggtataagttttatttttcaacggagaaaaatgtatattttaactcaagaggggaggggagtgtaattcaaacttcttttcgaggatgagagtgtaat 31886454  T
Q  104 ttgctttattttaattgatcgcatgttgagtttcattatgagttatatgatggagaagaaaggttgaacctttgtc 179  Q
    || || ||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||    
T  31886455 tttctatattttaattgatcgcatgttgagtttcattttgggttatctgatgcagaagaaaggttgaacctttgtc 31886530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 24763980 - 24764203
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagggaggg-gagtgtaattcaaacttcttttaaaggatgagagtgtaatttg 106  Q
    |||||||||||||||||||| | ||   ||||||| |||||| | |||| | | |  |||| |||||||||||  |||||  |||||| |||||||||||    
T  24763980 gtataagttttatttttcaaggaaggggagtgtatattttaaattaagatgaaagatgagtctaattcaaactatttttaggggatgatagtgtaatttg 24764079  T
Q  107 ctttattttaattgatcgcatgttgagtttcattatgagttatatgatggagaagaaaggttgaacctttgtcnnnnnnntaaaatcagaatttaactga 206  Q
    || |||||||||||||||||| |||||||||||| |  ||||  ||||| ||| ||||||||||| ||||||        | |||||| |||||||||||    
T  24764080 ctctattttaattgatcgcatattgagtttcattttaggttacttgatgtagaggaaaggttgaa-ctttgt-aaaaaaattaaatcacaatttaactga 24764177  T
Q  207 taaaaagttaaagctcattatagttc 232  Q
    ||||||||||| ||||||||||||||    
T  24764178 taaaaagttaaggctcattatagttc 24764203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 17336445 - 17336347
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||||||||||| |||| || |||||| |||||||| ||||||| | ||| |||||||||||||||||||||| ||| |||||||| ||||    
T  17336445 gtataaattttatttttcaagggaggaaggtgtatattttaacttaagaggggaagggtgtgtaattcaaacttcttttaatggaggagagtgttattt 17336347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 15175275 - 15175204
Alignment:
Q  35 aagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||| |||||||  ||||||| |||| |||||||||||| | ||||| |||||| |||||||||||||    
T  15175275 aagtgtatattttaacataagaggggagggaagtgtaattcaagcatctttgaaaggaggagagtgtaattt 15175204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 36737433 - 36737524
Alignment:
Q  15 ttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||||||||| ||||  |||||||| |||||||  |||| |||||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  36737433 ttttatttttcaagggagggaagtgtatattttaacataagaggggaggggagtgtaattcaagcatctttaaggggaggggagtgtaattt 36737524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 1406213 - 1406311
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagg-gaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||||||||||| |||| | ||||||| |||||||  |||||| || | ||||||||||||| ||||| ||| || | | |||||||||||    
T  1406213 gtataaattttatttttcaatggaggagagtgtatattttaacataagaggagatgagagtgtaattcaagcttctcttagagaaggggagtgtaattt 1406311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 9118904 - 9118834
Alignment:
Q  36 agtgtatgttttaactcaagag-ggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||| ||||| ||| ||||||||||||||||| ||||| | |||| | |||||||||||    
T  9118904 agtgtatattttaacttaagagaggaagggagtgtaattcaaacatctttaagaggaggggagtgtaattt 9118834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 21639087 - 21639017
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||  ||||||| || |||||||||||||| | ||||| || |||||||||||||||||    
T  21639087 agtgtatattttaacataagaggggagtggagtgtaattcaagcatctttgaagggatgagagtgtaattt 21639017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 31850101 - 31850003
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagag-ggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||||||||||| |||| ||||||||| |||||||  ||||| ||| | ||||||||||||| | ||| ||| | || | |||||||||||    
T  31850101 gtataaattttatttttcaaaggaggaaagtgtatattttaacataagagaggatgagagtgtaattcaagcatctcttagacgaggggagtgtaattt 31850003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 20691190 - 20691113
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  20691190 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 20691113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 37333979 - 37333902
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  37333979 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 37333902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 37657457 - 37657380
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  37657457 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 37657380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 24624893 - 24624845
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaa 76  Q
    |||| ||||||||| |||||||| ||||||| |||||||||||||||||    
T  24624893 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaa 24624845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 98 - 272
Target Start/End: Original strand, 19345365 - 19345537
Alignment:
Q  98 tgtaatttgctttattttaattgatcgcatgttgagtttcattatgagttatatgatggagaagaaaggttgaacctttgtcnnnnnnntaaaatcagaa 197  Q
    ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||       |||||||| |     
T  19345365 tgtaatttgctctattttaattgatcgcatgttgagtttcattttg-gttatatgatgtagaagaaaggttgaacctttgtcaaaaaa-taaaatcacag 19345462  T
Q  198 tttaactgataaaaagttaaagctcattatagttcgtttgatccatacgaacgaatcattatagttcattcatct 272  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19345463 tttaactgataaaaagttaaagctcagtatagttcgtttgatccatacgaacgaatcattatagttcattcatct 19345537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 17058439 - 17058536
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaag-agggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaatt 104  Q
    |||||||||||||||||||| ||||  |||| |||||||||||| ||| | |||| |||||||||||||| ||||||||| || ||  ||||||||||    
T  17058439 gtataagttttatttttcaagggagggaagtatatgttttaacttaagaatggagaggagtgtaattcaagcttcttttagagaataggagtgtaatt 17058536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 11414479 - 11414555
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagagggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| ||| |||| |||||||||||||||||||||||| | ||||| |  ||||| |||||||||||    
T  11414479 ggagtaaagtgtatatttcaacttaagagggaggggagtgtaattcaagcatctttgaggggatgggagtgtaattt 11414555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 34668344 - 34668446
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtg----taattcaaacttcttttaaaggatgagagtgtaa 102  Q
    |||||||||||||||||||| |||   ||||||||||||||||| |||| |||||  |||||    |||||||| |||||||||| ||| | ||||||||    
T  34668344 gtataagttttatttttcaagggacggaagtgtatgttttaacttaagaggggagaagagtgtaattaattcaagcttcttttaacggaggcgagtgtaa 34668443  T
Q  103 ttt 105  Q
    |||    
T  34668444 ttt 34668446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 9830376 - 9830294
Alignment:
Q  5 ggggtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaaacttctttta 86  Q
    ||||||||| ||||||||||||| ||||   ||||||| |||||||| |||| |||| |  |||||||||||| |||||||||    
T  9830376 ggggtataacttttatttttcaagggaggggagtgtatattttaacttaagaggggatgaaagtgtaattcaagcttctttta 9830294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 37183149 - 37183079
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||| ||||| |  ||| | |||||||||||    
T  37183149 agtgtatattttaacttaagaggggaggggagtgtaattcaaacatctttgaggggaggggagtgtaattt 37183079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 54606429 - 54606499
Alignment:
Q  36 agtgtatgttttaactcaagagg-gaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||  |||||| |||||||||||||||||||| | |||||  ||| |||||||||||||    
T  54606429 agtgtatattttaacataagaggagaggggagtgtaattcaaacattttttaggggaggagagtgtaattt 54606499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 11056558 - 11056635
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  11056558 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttaaggggaggggagtgtaattt 11056635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 22130395 - 22130472
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  22130395 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 22130472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 23309014 - 23308937
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  23309014 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttaaggggaggggagtgtaattt 23308937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 33115232 - 33115309
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||||||||| |||||||  ||||||| |||| |||||||||||| | ||||| | | || |||||||||||||    
T  33115232 ggagaaaagtgtatattttaacataagaggggagggaagtgtaattcaagcatctttgagaagaggagagtgtaattt 33115309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 54403658 - 54403589
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaa 76  Q
    |||||| ||||| ||||||| ||||  |||||||| |||||||  ||||||| |||||||||||||||||    
T  54403658 gtataacttttacttttcaagggagggaagtgtatattttaacataagaggggaggggagtgtaattcaa 54403589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 13623277 - 13623205
Alignment:
Q  5 ggggtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaa 76  Q
    ||||||||| ||||| ||||||| ||||  |||||||| |||||||  ||||||| |||| ||||||||||||    
T  13623277 ggggtataaattttaattttcaagggagggaagtgtatattttaacataagaggggagggaagtgtaattcaa 13623205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 47794659 - 47794727
Alignment:
Q  38 tgtatgttttaactcaagagg-gaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||| |||||||  |||||| |||||||||||||||||||| ||||| |  ||| |||||||||||||    
T  47794659 tgtatattttaacataagaggagaggggagtgtaattcaaacatctttaaggggaggagagtgtaattt 47794727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 64 - 272
Target Start/End: Original strand, 25276238 - 25276443
Alignment:
Q  64 gagtgtaattcaaacttcttttaaaggatgagagtgtaatttgctttattttaattgatcgcatgttgagtttcattatgagttatatgatggagaagaa 163  Q
    |||||||||||||||||||||||  |||||| ||| |||||| || ||||||||||||  ||||||||||||||||| || ||||  | |||  ||||||    
T  25276238 gagtgtaattcaaacttcttttaggggatgaaagtctaatttactctattttaattga--gcatgttgagtttcattttgcgttacctaatgccgaagaa 25276335  T
Q  164 aggttgaacctttgtcnnnnnnntaaaatcagaatttaactgataaaaagttaaagctcattatagttcgtttgatccatacgaacgaatcattatagtt 263  Q
    ||||||||||||||||       | |||||| ||||||| |||||||||||||| ||||||||| |||| ||||||||| | ||| || |||||||||||    
T  25276336 aggttgaacctttgtcaaaaaatt-aaatcacaatttaagtgataaaaagttaaggctcattatcgttcatttgatccagaagaaagactcattatagtt 25276434  T
Q  264 cattcatct 272  Q
    |||| ||||    
T  25276435 catttatct 25276443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 44284328 - 44284426
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||||||||||| |||| ||||||||| |||||||  |||| |||||||||||||||||||| | ||| |||  ||| | |||||||||||    
T  44284328 gtataaattttatttttcaagggaggaaagtgtatattttaacataagaggggaggggagtgtaattcaagcatctcttaggggaggggagtgtaattt 44284426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 42198587 - 42198539
Alignment:
Q  57 gggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  42198587 gggaggggagtgtaattcaagcttcttttaagggaggagagtgtaattt 42198539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 30990890 - 30990799
Alignment:
Q  15 ttttatttttcaacggagaaaagtgtatgttttaactcaagagg-gaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||||||||  ||||  | ||||| |||||||  |||||| || ||||||||||||||| ||||||| |||||||| |||||||||||    
T  30990890 ttttatttttcaaaagagaggaatgtatattttaacataagaggagatgggagtgtaattcaagcttctttgaaaggatgggagtgtaattt 30990799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 32904224 - 32904295
Alignment:
Q  35 aagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||| |||||||  ||||||| ||||||||||||||||| | ||||| || |||||||||||||||||    
T  32904224 aagtgtatattttaacataagaggggaggggagtgtaattcaagcatctttgaagggatgagagtgtaattt 32904295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 17564767 - 17564669
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| ||||   ||||||| |||||||  ||||||| |||| |||||||||||||| ||||| | |||| | |||||||||||    
T  17564767 gtataaattttacttttcaagggaggggagtgtatattttaacataagaggggagggaagtgtaattcaaacatctttgagaggaggggagtgtaattt 17564669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 40791145 - 40791047
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| ||||   ||||||| |||||||  ||||||| ||| |||| |||||||||| ||||| |  |||||||||||||||||    
T  40791145 gtataaattttacttttcaagggagggtagtgtatattttaacataagaggggaggagagtataattcaaacatctttgaggggatgagagtgtaattt 40791047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 3075945 - 3076042
Alignment:
Q  9 tataagttttatttttcaacggagaaaagtgtatgttttaactcaagagg-gaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||| |||||||||||||  |||   ||||||| ||||||   |||||| |||||||||||||||||| | ||||| | |||| |||||||||||||    
T  3075945 tataaattttatttttcaagagaggggagtgtatattttaatataagaggagaggggagtgtaattcaagcatctttgagaggaggagagtgtaattt 3076042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 25485432 - 25485481
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttt 84  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||| |||||    
T  25485432 agtgtatattttaacttaagaggggaggggagtgtaattcaaacatcttt 25485481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 25597851 - 25597774
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagag-ggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||| ||||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  25597851 ggagtaaagtgtatattttaacttaagagaggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 25597774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 31847003 - 31847052
Alignment:
Q  56 agggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||||  |||||||||||| ||||| |||||| |||||||||||||    
T  31847003 agggagggggttgtaattcaaacatctttgaaaggaggagagtgtaattt 31847052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 6477 - 6700
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagggaggg-gagtgtaattcaaacttcttttaaaggatgagagtgtaatttg 106  Q
    |||||||||||||||||||| | ||   ||||||| |||||| | |||| | | |  |||| |||||||||||  |||||  |||||| |||||||||||    
T  6477 gtataagttttatttttcaaggaaggggagtgtatattttaaattaagatgaaagatgagtctaattcaaactatttttaggggatgatagtgtaatttg 6576  T
Q  107 ctttattttaattgatcgcatgttgagtttcattatgagttatatgatggagaagaaaggttgaacctttgtcnnnnnnntaaaatcagaatttaactga 206  Q
    || |||||||||||||||||| |||||||||||| |  ||||  ||||| ||| ||||||||||| ||||||        | |||||| |||||||||||    
T  6577 ctctattttaattgatcgcatattgagtttcattttaggttacttgatgtagaggaaaggttgaa-ctttgt-aaaaaaattaaatcacaatttaactga 6674  T
Q  207 taaaaagttaaagctcattatagttc 232  Q
    ||||||||||| ||||||||||||||    
T  6675 taaaaagttaaggctcattatagttc 6700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 49129653 - 49129732
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttctttta 86  Q
    |||||| ||||||||||||| |||||| | ||||| |||||||  ||||||| |||||||||||||||||||||||||||    
T  49129653 gtataaattttatttttcaagggagaagattgtatattttaacataagaggggaggggagtgtaattcaaacttctttta 49129732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 1114860 - 1114931
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaaac 78  Q
    |||||| ||||||||||||| || ||||||||||| |||||||  |||| ||||||||||||||||||||||    
T  1114860 gtataaattttatttttcaagggtgaaaagtgtatattttaacataagaggggaggggagtgtaattcaaac 1114931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 1845928 - 1845855
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaatttgct 108  Q
    |||||||||||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | ||||||||||||||    
T  1845928 agtgtatgttttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaatttgct 1845855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 41322194 - 41322271
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| |||||||||||||    
T  41322194 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggagagtgtaattt 41322271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 45737401 - 45737332
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaa 76  Q
    |||||| ||||||||||||| |||| | ||||||| |||||||  |||| ||||||||||||||||||||    
T  45737401 gtataaattttatttttcaagggaggagagtgtatattttaacataagaggggaggggagtgtaattcaa 45737332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 25813097 - 25813009
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaatttgctttatttta 116  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | ||||||||||| || |||||||    
T  25813097 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggcgagtgtaatttactctatttta 25813009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 36512036 - 36512133
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagg-gaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||||||||||| |||||||| | ||| |||||||  |||||| |||  ||||||||||||||| ||| | |||||| || ||||||||||    
T  36512036 gtataaattttatttttcaaaggagaaaaatatatattttaacataagaggagagatgagtgtaattcaaacatctctcaaagga-gaaagtgtaattt 36512133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 36605406 - 36605476
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||  ||||||| ||||||||||||||||||| ||||| |  ||| |||||||||||||    
T  36605406 agtgtatattttaacataagaggggaggggagtgtaattcaaacatctttgaggggaggagagtgtaattt 36605476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 35383627 - 35383668
Alignment:
Q  64 gagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||||||||| |||||||||||||| ||||||| |||||    
T  35383627 gagtgtaattcaagcttcttttaaaggacgagagtgaaattt 35383668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 52505973 - 52506021
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaa 76  Q
    |||| ||||||||| |||||||| ||||||| |||||||||||||||||    
T  52505973 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaa 52506021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 31882487 - 31882595
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaatttg 106  Q
    |||||| ||||||||||||| ||||| |||||||| ||| ||| ||||| |||||  ||||||||||||||| ||||| |  ||| |||||||||||||     
T  31882487 gtataacttttatttttcaagggagagaagtgtatatttgaacacaagaggggagatgagtgtaattcaaacatctttgaggggaggagagtgtaatttt 31882586  T
Q  107 ctttatttt 115  Q
    || ||||||    
T  31882587 ctctatttt 31882595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 2092315 - 2092413
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| |||   |||||||| ||||||   ||||||| ||||||||||||||||||| | ||| ||||||||||||||||||||    
T  2092315 gtataaattttacttttcaagggatggaagtgtatattttaatataagaggggaggggagtgtaattcaaacatatttgaaaggatgagagtgtaattt 2092413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 34280091 - 34280014
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||||| ||||| || ||| | |||||||||||    
T  34280091 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaaacatctttgaagggaggggagtgtaattt 34280014  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 12767584 - 12767659
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaaacttct 82  Q
    |||||| ||||||||||||| ||||  |||||||| |||||||  |||| |||||||||||||||||||| |||||    
T  12767584 gtataaattttatttttcaagggagggaagtgtatattttaacataagaggggaggggagtgtaattcaagcttct 12767659  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 21802582 - 21802680
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| ||||   ||||||| |||||||  ||||||| ||| ||||||||||||| | ||||||| |||| |||||||||||||    
T  21802582 gtataaattttacttttcaagggaggggagtgtatattttaacataagaggggaggagagtgtaattcaagcatcttttagaggaggagagtgtaattt 21802680  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 4126465 - 4126561
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| |||| | ||||||| |||||||  ||||||| ||  |||||||||||||| ||||| || ||| |||||||||||||    
T  4126465 gtataaattttacttttcaaaggaggagagtgtatattttaacataagaggg-ggatagtgtaattcaaacatctttaaacggaggagagtgtaattt 4126561  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 14873696 - 14873773
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||||| |||||||||||    
T  14873696 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggatgggagtgtaattt 14873773  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 32131005 - 32130962
Alignment:
Q  35 aagtgtatgttttaactcaagagggaggggagtgtaattcaaac 78  Q
    |||||||| |||||||  ||||||||||||||||||||||||||    
T  32131005 aagtgtatattttaacataagagggaggggagtgtaattcaaac 32130962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 188439 - 188509
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||| ||||||| ||||||||||||||||| | ||||| || ||| | |||||||||||    
T  188439 agtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttaaagggaggggagtgtaattt 188509  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 9240928 - 9240878
Alignment:
Q  35 aagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttt 84  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||| |||||    
T  9240928 aagtgtatattttaacttaagaggggaggggagtgtaattcaaacatcttt 9240878  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 4101102 - 4101198
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| |||| | ||||||| |||||||  ||||||| ||  |||||||||||||| ||||| |  ||| |||||||||||||    
T  4101102 gtataaattttacttttcaaaggaggagagtgtatattttaacataagaggg-ggatagtgtaattcaaacatctttaagcggaggagagtgtaattt 4101198  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 9241538 - 9241615
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  9241538 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 9241615  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 11523476 - 11523553
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  11523476 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 11523553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 11793549 - 11793504
Alignment:
Q  60 aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||||||||||||| |||||||||||||| |  ||||||||||    
T  11793549 aggggagtgtaattcaagcttcttttaaaggagggaagtgtaattt 11793504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 12025592 - 12025515
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggga-ggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| |||||||| |||||||||||||||| | ||||| |  ||| | |||||||||||    
T  12025592 ggagtaaagtgtatattttaacttaagagggaaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 12025515  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 34709916 - 34709993
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  34709916 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 34709993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 27923748 - 27923796
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaa 76  Q
    |||| ||||||||| |||||||| ||||||| |||||||||||||||||    
T  27923748 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaa 27923796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 28023607 - 28023559
Alignment:
Q  57 gggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||||||||||||||||| ||||| || ||| | |||||||||||    
T  28023607 gggaggggagtgtaattcaaacatctttgaagggaggggagtgtaattt 28023559  T

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Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 185162 - 185267
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggga--ggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| | || | ||||||| |||||||  ||||||||  |||| ||||||||||| |||||||||| ||| |||||||||||||    
T  185162 gtataaattttacttttcaaggaaggagagtgtatattttaacataagagggaagggggggtgtaattcaagcttcttttaagggaggagagtgtaattt 185261  T
Q  106 gcttta 111  Q
     |||||    
T  185262 acttta 185267  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 21037395 - 21037313
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagag-ggaggggagtgtaattcaaacttcttttaaag 89  Q
    |||||| ||||| ||||||| |||| ||||||||| |||||||  ||||| ||||||||||||||||||| ||||| ||||||    
T  21037395 gtataaattttacttttcaagggaggaaagtgtatattttaacataagagaggaggggagtgtaattcaagcttctcttaaag 21037313  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 6232497 - 6232420
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagagg-gaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| |||||| |||||||||||||||||| | ||||| |  ||| |||||||||||||    
T  6232497 ggagtaaagtgtatattttaacttaagaggagaggggagtgtaattcaagcatctttgaggggaggagagtgtaattt 6232420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 796452 - 796382
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||| ||||||| ||||||||||||||||| | ||||| || ||| | |||||||||||    
T  796452 agtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaagggaggggagtgtaattt 796382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 6711329 - 6711231
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| ||||  | |||||| ||||||| |||||||| |||| |||||||||||| | ||||| |  ||||| |||||||||||    
T  6711329 gtataaattttacttttcaagggagggaggtgtatattttaacacaagaggggagggaagtgtaattcaagcatctttgaggggatgggagtgtaattt 6711231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 8138419 - 8138321
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagg-gaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||||||||||| ||||  |||||||| |||||||  ||||||  ||||| ||||||||||| ||||| |||  ||| | |||||||||||    
T  8138419 gtataaattttatttttcaagggagggaagtgtatattttaacataagaggaaaggggtgtgtaattcaagcttctcttaggggaggggagtgtaattt 8138321  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 23269237 - 23269167
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||| ||||||| ||||||||||||||||| | ||||| || ||| | |||||||||||    
T  23269237 agtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaagggaggggagtgtaattt 23269167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 55068912 - 55068830
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaatttgctttattttaa 117  Q
    ||||||| |||||||  ||||||| ||||||||||||||||| | ||||| | |||| | ||||||||||| || ||||||||    
T  55068912 agtgtatattttaacataagaggggaggggagtgtaattcaagcatctttgagaggaggggagtgtaatttactctattttaa 55068830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 615510 - 615433
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggga-ggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||| || |||||||||||||||| | ||||| |  ||| |||||||||||||    
T  615510 ggagtaaagtgtatattttaacttaagagtgaaggggagtgtaattcaagcatctttgaggggaggagagtgtaattt 615433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 7165472 - 7165395
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  7165472 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 7165395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 12250750 - 12250673
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  12250750 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaagggagtgtaattt 12250673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 13392750 - 13392827
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  13392750 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 13392827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 13395889 - 13395966
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  13395889 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 13395966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 46096118 - 46096195
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| | ||||||||||||||| | ||||| || ||| | |||||||||||    
T  46096118 ggagtaaagtgtatattttaacttaagaggggaagggagtgtaattcaagcatctttgaagggaggggagtgtaattt 46096195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 46138619 - 46138696
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| | ||||||||||||||| | ||||| || ||| | |||||||||||    
T  46138619 ggagtaaagtgtatattttaacttaagaggggaagggagtgtaattcaagcatctttgaagggaggggagtgtaattt 46138696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 47029893 - 47029816
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  47029893 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 47029816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 23308874 - 23308826
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaa 76  Q
    |||| ||||||||| |||||||| ||||||| |||||||||||||||||    
T  23308874 ggaggaaagtgtatattttaacttaagaggggaggggagtgtaattcaa 23308826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 23309477 - 23309525
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaa 76  Q
    |||| ||||||||| |||||||| ||||||| |||||||||||||||||    
T  23309477 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaa 23309525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 29824028 - 29824105
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||||| ||||| || ||| | |||||||||||    
T  29824028 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaaacatctttgaagggaggggagtgtaattt 29824105  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 6184720 - 6184641
Alignment:
Q  36 agtgtatgttttaactcaagagggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaatttgctttatttt 115  Q
    ||||||| |||||||| |||||||||| ||||||||||||||| ||||| |  ||| | ||||||||||| || ||||||    
T  6184720 agtgtatattttaacttaagagggaggagagtgtaattcaaacatctttgaggggaggggagtgtaatttactctatttt 6184641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 553458 - 553327
Alignment:
Q  110 tattttaattgatcgcatgttgagtttcattatgagttatatgatggagaagaaaggttgaacctttgtcnnnnnnntaaaatcagaatttaactgataa 209  Q
    |||||||||||||| ||| |||||||||||| || ||||  ||||| | |||||||||||||| ||| ||       | | |||| ||||||| | ||||    
T  553458 tattttaattgatcacatcttgagtttcattttgggttacctgatgcaaaagaaaggttgaacttttatc-aaaaaatcatatcacaatttaattaataa 553360  T
Q  210 aaagttaaagctcattatagttcgtttgatcca 242  Q
    |||||||| |||||||||| ||| |||||||||    
T  553359 aaagttaaggctcattataattcatttgatcca 553327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 2790177 - 2790079
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||||||||||| ||||   | ||||| |||||||| ||||||| ||||||||||||||||||| ||||| |   || |||||||||||||    
T  2790177 gtataaattttatttttcaagggaggggaatgtatattttaacttaagaggggaggggagtgtaattcaaacatctttgaggagaggagagtgtaattt 2790079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 36688837 - 36688907
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaa 77  Q
    |||||| ||||| ||||||| |||| ||||||||| |||||||  ||||||| ||||||||||||||||||    
T  36688837 gtataacttttacttttcaagggaggaaagtgtatattttaacataagaggggaggggagtgtaattcaaa 36688907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 2146105 - 2146035
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||| ||||||| ||||||||||||||||| | ||||| || ||| | |||||||||||    
T  2146105 agtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaagggaggggagtgtaattt 2146035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 11639993 - 11639895
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| |||| | ||||||| |||||||  ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  11639993 gtataaattttacttttcaaaggaggagagtgtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 11639895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 23232910 - 23232868
Alignment:
Q  63 ggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||||||||||||||||||| || ||| |||||||||||    
T  23232910 ggagtgtaattcaaacttcttttagagaatgtgagtgtaattt 23232868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 35782931 - 35782833
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagg-gaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||||||||||||||| ||||   ||| ||  |||||||| |||| | |||||||||||||||||| |||| ||||  |||  ||||||||||||    
T  35782931 gtataagttttatttttcaagggaggggagtttaaattttaacttaagatgagaggggagtgtaattcaagcttcctttaggggagaagagtgtaattt 35782833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 40401557 - 40401627
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||  ||||||| ||||||||||||||||| | ||||| || ||| |||||||||||||    
T  40401557 agtgtatattttaacataagaggggaggggagtgtaattcaagcatctttgaagggaggagagtgtaattt 40401627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 317956 - 318033
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  317956 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 318033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 2146873 - 2146950
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggga-ggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| |||||||| |||||||||||||||| | ||||| |  ||| | |||||||||||    
T  2146873 ggagtaaagtgtatattttaacttaagagggaaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 2146950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 6185331 - 6185408
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  6185331 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 6185408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 6191847 - 6191924
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  6191847 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 6191924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 25607000 - 25606923
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  25607000 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 25606923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 25607617 - 25607666
Alignment:
Q  36 agtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttt 84  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||| |||||    
T  25607617 agtgtatattttaacttaagaggggaggggagtgtaattcaaacatcttt 25607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 32867340 - 32867243
Alignment:
Q  9 tataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||| ||||||||||||| |||||  ||||||| |||||||  |||| ||||||||| |||||||||| | ||||| || ||| | |||| ||||||    
T  32867340 tataaattttatttttcaaaggagaggagtgtatattttaacataagaggggaggggaatgtaattcaagcatctttgaagggaggggagtataattt 32867243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 42813577 - 42813654
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagag-ggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||  ||||| ||||||||||||||||||| | ||||| |  | |||||||||||||||    
T  42813577 ggaggaaagtgtatattttaacataagagaggaggggagtgtaattcaagcatctttgagggaatgagagtgtaattt 42813654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 25945 - 26001
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttt 84  Q
    |||| ||||||||| |||||||| ||||||| ||| ||||||||||||||| |||||    
T  25945 ggagtaaagtgtatattttaacttaagaggggaggtgagtgtaattcaaacatcttt 26001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 40344440 - 40344512
Alignment:
Q  34 aaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||||| |||||||  ||||||| ||| ||||||||||||||| ||||| | |||| | |||||||||||    
T  40344440 aaagtgtatattttaacataagaggggaggagagtgtaattcaaacatctttaagaggaagggagtgtaattt 40344512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 22298228 - 22298336
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaatttg 106  Q
    |||||| ||||||||||||| |||||| ||||||| |||||||  |||| ||||| |||||||||||||| ||||| ||| | ||   |||||||||||     
T  22298228 gtataaattttatttttcaagggagaagagtgtatattttaacataagaggggagaggagtgtaattcaagcttctcttagaagagaggagtgtaattta 22298327  T
Q  107 ctttatttt 115  Q
    || ||||||    
T  22298328 ctctatttt 22298336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 7939423 - 7939325
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagggaggg-gagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| ||||  |||||||| |||||||  |||||||| || ||||||||||||| | ||||| || |||  ||||||||||||    
T  7939423 gtataaattttacttttcaagggaggtaagtgtatattttaacataagagggaaggagagtgtaattcaagcatctttgaagggagtagagtgtaattt 7939325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 37199577 - 37199675
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| ||||   ||||||| |||||||  ||||||| ||||||||||||||||||| ||||| |  ||| | |||||||||||    
T  37199577 gtataaattttacttttcaagggaggggagtgtatattttaacataagaggggaggggagtgtaattcaaacatctttgaggggaggggagtgtaattt 37199675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 3515446 - 3515527
Alignment:
Q  4 aggggtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttt 84  Q
    |||||||||| ||||| ||||||| ||||   ||||||| |||||||  ||||||| ||||| ||||||||||||| |||||    
T  3515446 aggggtataaattttacttttcaaaggaggggagtgtatattttaacataagaggggaggggggtgtaattcaaacatcttt 3515527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 11796788 - 11796896
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaatttg 106  Q
    |||||| ||||| ||||||| ||||  || ||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||     
T  11796788 gtataaattttacttttcaa-ggagggaaatgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattta 11796886  T
Q  107 ctttatttta 116  Q
    || |||||||    
T  11796887 ctctatttta 11796896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 20893279 - 20893202
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| |||||| |||||||||| | ||||| | |||| | |||||||||||    
T  20893279 ggagtaaagtgtatattttaacttaagaggggaggggattgtaattcaagcatctttgagaggaggggagtgtaattt 20893202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 34248061 - 34248138
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||| |||||||| |||||||| ||||||| ||||||||||||||||| | ||||| |  ||| | |||||||||||    
T  34248061 ggagagaagtgtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaattt 34248138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 35899817 - 35899894
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||| ||||||||| |||||||| ||||||| |||||||||||||| || | ||||| || ||| | |||||||||||    
T  35899817 ggagtaaagtgtatattttaacttaagaggggaggggagtgtaattgaagcatctttgaagggaagggagtgtaattt 35899894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 40769347 - 40769416
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagagg-gaggggagtgtaattcaa 76  Q
    |||||| ||||| ||||||| |||| | ||||||| |||||||  |||||| ||||||||||||||||||    
T  40769347 gtataaattttacttttcaagggaggagagtgtatattttaacataagaggtgaggggagtgtaattcaa 40769416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 16111165 - 16111213
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagag-ggaggggagtgtaattcaa 76  Q
    ||||| |||||||| |||||||| ||||| |||||||||||||||||||    
T  16111165 ggagagaagtgtatattttaacttaagagtggaggggagtgtaattcaa 16111213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 35954022 - 35954070
Alignment:
Q  57 gggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||||||||| |||||||| ||| | |||||||||||    
T  35954022 gggagggaagtgtaattcaaacatcttttaagggaggggagtgtaattt 35954070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 38911338 - 38911386
Alignment:
Q  36 agtgtatgttttaactcaagagggaggggagtgtaattcaaacttcttt 84  Q
    ||||||| |||||||  |||||| ||||||||||||||||||| |||||    
T  38911338 agtgtatattttaacataagaggaaggggagtgtaattcaaacatcttt 38911386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 59357 - 59259
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||| ||||| ||||||| ||||   ||||||| |||||||  ||||||| ||| ||||||||||||| | ||||||| |||| |||||||||||||    
T  59357 gtataaattttacttttcaagggaggggagtgtatattttaacataagaggggaggagagtgtaattcaagcatcttttagaggaggagagtgtaattt 59259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 67812 - 67744
Alignment:
Q  8 gtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattca 75  Q
    |||||| ||||| ||||||| |||||||||||||| ||||| |  |||| |||||||||||||||||||    
T  67812 gtataaattttacttttcaaaggagaaaagtgtatattttatcataagaggggaggggagtgtaattca 67744  T

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Target: scaffold0451 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0451
Description:

Target: scaffold0451; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 7927 - 7856
Alignment:
Q  35 aagtgtatgttttaactcaagaggg-aggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    |||||||| |||||||| ||||||| | |||||  |||||||||||||||||| |||| |||| ||||||||    
T  7927 aagtgtatattttaacttaagaggggacgggagcataattcaaacttcttttagaggaggagaatgtaattt 7856  T

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Target: scaffold2113 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 795 - 725
Alignment:
Q  36 agtgtatgttttaactcaagag-ggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaattt 105  Q
    ||||||| |||||||| ||||| ||||||||||||||||||| | ||||| |  ||||| |||||||||||    
T  795 agtgtatattttaacttaagagtggaggggagtgtaattcaagcatctttgaggggatgggagtgtaattt 725  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 16554 - 16474
Alignment:
Q  36 agtgtatgttttaactcaaga-gggaggggagtgtaattcaaacttcttttaaaggatgagagtgtaatttgctttatttt 115  Q
    ||||||| |||||||  |||| |||||||||||||||||||| | ||||| || ||| | ||||||||||| || ||||||    
T  16554 agtgtatattttaacataagatgggaggggagtgtaattcaagcatctttaaagggaggggagtgtaatttactctatttt 16474  T

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Target: scaffold0289 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 4022 - 4094
Alignment:
Q  5 ggggtataagttttatttttcaacggagaaaagtgtatgttttaactcaaga-gggaggggagtgtaattcaa 76  Q
    ||||||||| ||||| ||||||| |||   |||||||| |||||||  |||| ||||||||||||||||||||    
T  4022 ggggtataaattttaattttcaagggacggaagtgtatattttaacataagatgggaggggagtgtaattcaa 4094  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 33343 - 33391
Alignment:
Q  29 ggagaaaagtgtatgttttaactcaagaggga-ggggagtgtaattcaa 76  Q
    |||| ||||||||| |||||||| |||||||| ||||||||||||||||    
T  33343 ggagtaaagtgtatattttaacttaagagggaaggggagtgtaattcaa 33391  T

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