View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_high_15 (Length: 277)
Name: NF18694_high_15
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 39575981 - 39575732
Alignment:
| Q |
15 |
tattcgttcatgtgaaatcggaaaaagaggaatcctaagccaacatttgaggatggggttcacgacgaaattttgtctacaacgattcgaaagtagcaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39575981 |
tattcgttcatgtgaaatcggaaaaagaggaatcctaagccaacatttgaggatggggttcacgacgaaattttgtctacaacgattcgaaagtagcaat |
39575882 |
T |
|
| Q |
115 |
atgccatcacaagtactgattaaatcccccattgtttggggtgttcctaaatcaatcctttcaaactgaccactcatatcatctttaatatccaagaaat |
214 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39575881 |
atgccatcacaagtactgattaaatctcccattgtttggggtgttcccaaatcaatcctttcaaattgaccactcatatcatctttaatatccaagaaat |
39575782 |
T |
|
| Q |
215 |
aggaactactttcttccatgcggttttcaacgtaaagaccaagtttagaa |
264 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39575781 |
aggaactactttcttccatgcgcttttcaacgtaaagaccaagtttagaa |
39575732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 39571974 - 39571726
Alignment:
| Q |
16 |
attcgttcatgtgaaatcggaaaaagaggaatcctaagccaacatttgaggatggggttcacgacgaaattttgtctacaacgattcgaaagtagcaata |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||||||| ||||| |||||||| ||||||||||||||||| |
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| T |
39571974 |
attcgttcatgtgaaatcggaaaaagaggaatcctgagccaacacttgaggatagagttcacgacgatattttctctacaaccattcgaaagtagcaata |
39571875 |
T |
|
| Q |
116 |
tgccatcacaagtactgattaaatcccccattgtttggggtgttcctaaatcaatcctttcaaactgaccactcatatcatctttaatatccaagaaata |
215 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||| || | | |||||||||||||||||||||||||||| |
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| T |
39571874 |
tgccatcacaagtactgattaaatcccccattgtttgaggtgtttccaaatcaatcctttcaaattgcctattcatatcatctttaatatccaagaaata |
39571775 |
T |
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| Q |
216 |
ggaactactttcttccatgcggttttcaacgtaaagaccaagtttagaa |
264 |
Q |
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|||||||||| | |||||||||||||||||||| ||||||||||||| |
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| T |
39571774 |
agaactactttttgacatgcggttttcaacgtaaataccaagtttagaa |
39571726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 3562125 - 3562177
Alignment:
| Q |
163 |
aaatcaatcctttcaaactgaccactcatatcatctttaatatccaagaaata |
215 |
Q |
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||||||||||||||||| |||||| | | |||||||||||||||||||||||| |
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| T |
3562125 |
aaatcaatcctttcaaagtgaccatttaaatcatctttaatatccaagaaata |
3562177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 264
Target Start/End: Complemental strand, 9846591 - 9846440
Alignment:
| Q |
113 |
atatgccatcacaagtactgattaaatcccccattgtttggggtgttcctaaatcaatcctttcaaactgaccactcatatcatctttaatatccaagaa |
212 |
Q |
| |
|
||||||||||||| ||| |||||| || ||||||| ||| |||||||| |||||| |||||||||| || || ||| ||||||||||| |||||||| |
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| T |
9846591 |
atatgccatcacacgtattgattatattccccattccttgaggtgttcccaaatcagtcctttcaaattggtcattcacatcatctttaaattccaagaa |
9846492 |
T |
|
| Q |
213 |
ataggaactactttcttccatgcggttttcaacgtaaagaccaagtttagaa |
264 |
Q |
| |
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||| |||||||| | | |||| |||||||| ||||||||| |||||||| |
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| T |
9846491 |
ataagaactactctgtgttgtgcgattttcaacataaagaccaggtttagaa |
9846440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 225
Target Start/End: Complemental strand, 9841516 - 9841400
Alignment:
| Q |
109 |
agcaatatgccatcacaagtactgattaaatcccccattgtttggggtgttcctaaatcaatcctttcaaactgaccactcatatcatctttaatatcca |
208 |
Q |
| |
|
|||||||||||||||||| ||| ||||| || || | | |||| ||||||||||||||| |||||||||| || || ||| ||||||||||| |||| |
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| T |
9841516 |
agcaatatgccatcacaactaccgattacatatcctagtttttgaggtgttcctaaatcagtcctttcaaattggtcattcacatcatctttaaattcca |
9841417 |
T |
|
| Q |
209 |
agaaataggaactactt |
225 |
Q |
| |
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||||||| ||||||||| |
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| T |
9841416 |
agaaataagaactactt |
9841400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 9860237 - 9860187
Alignment:
| Q |
34 |
ggaaaaagaggaatcctaagccaacatttgaggatggggttcacgacgaaa |
84 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||||||| ||||||||| |||||| |
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| T |
9860237 |
ggaaaaggaggaattctaagccaacacttgaggagggggttcaccacgaaa |
9860187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 9859977 - 9859917
Alignment:
| Q |
101 |
tcgaaagtagcaatatgccatcacaagtactgattaaatcccccattgtttggggtgttcc |
161 |
Q |
| |
|
||||||| ||||||| |||||||||||||| ||||| ||| ||||| |||| |||||||| |
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| T |
9859977 |
tcgaaagcagcaataagccatcacaagtaccgattatatctcccatcctttgaggtgttcc |
9859917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 264
Target Start/End: Complemental strand, 46445568 - 46445365
Alignment:
| Q |
61 |
ttgaggatggggttcacgacgaaattttgtctacaacgattcgaaagtagcaatatgccatcacaagtactgattaaatcccccattgtttggggtgttc |
160 |
Q |
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|
|||||||||||||| || |||||| ||||| |||| | ||||||| | ||||| ||||||||||||||| |||| || |||| ||| ||| ||| |
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| T |
46445568 |
ttgaggatggggtttaccacgaaaaattgtccacaattactcgaaagaaacaataagccatcacaagtactaattatatatcccagattttcaggtattc |
46445469 |
T |
|
| Q |
161 |
ctaaatcaatcctttcaaactgaccactcatatcatctttaatatccaagaaataggaactactttcttccatgcggttttcaacgtaaagaccaagttt |
260 |
Q |
| |
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| ||||||| ||||||||| || || ||| |||||| |||| ||||||||||| |||| | || || || | | |||||||| || ||||||||||| |
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| T |
46445468 |
caaaatcaaacctttcaaattggccgttcacatcatcattaaattccaagaaataagaacgtccttgtttcacgagattttcaacatacagaccaagttt |
46445369 |
T |
|
| Q |
261 |
agaa |
264 |
Q |
| |
|
|||| |
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| T |
46445368 |
agaa |
46445365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 221
Target Start/End: Original strand, 49388099 - 49388201
Alignment:
| Q |
119 |
catcacaagtactgattaaatcccccattgtttggggtgttcctaaatcaatcctttcaaactgaccactcatatcatctttaatatccaagaaatagga |
218 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||| | |||||| |||||| || ||||||| || ||| ||| ||||||||| | ||||||||||| || |
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| T |
49388099 |
catcacaagtacctattaaatgccccattttttgagatgttcccaaatcagtcttttcaaattggccattcaaatcatctttgaattccaagaaataaga |
49388198 |
T |
|
| Q |
219 |
act |
221 |
Q |
| |
|
||| |
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|
| T |
49388199 |
act |
49388201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 7256436 - 7256398
Alignment:
| Q |
42 |
aggaatcctaagccaacatttgaggatggggttcacgac |
80 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||||||| |
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| T |
7256436 |
aggaattctaagccaacacttgaggatggggttcacgac |
7256398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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