View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18694_high_19 (Length: 251)
Name: NF18694_high_19
Description: NF18694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18694_high_19 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 16300695 - 16300455
Alignment:
| Q |
11 |
taatactcaaccattaaagaagagaaaggctaatgcaaatggtcctaggcaaacagcggcttgctgggaacactttataaggttacctgatagtgaggtt |
110 |
Q |
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| T |
16300695 |
taatactcaaccattaaagaagagaaaggctaatgcaaatggtcctaggcaaacagcggcttgctgggaacactttataaggttacctgatagtgaggtt |
16300596 |
T |
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| Q |
111 |
gacaaaccaactgcttcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccaaaaacttgaacacacatatcactaaatgtc |
210 |
Q |
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| T |
16300595 |
gacaaaccaactgctgcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccaaaaacttgaacacacatataactaaatgtc |
16300496 |
T |
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| Q |
211 |
ttatccttcaatgttttctaaaaaatggccccaaccaaacc |
251 |
Q |
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| T |
16300495 |
ttatccttcaatgttttttaaaaaatggccccaaccaaacc |
16300455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 22898192 - 22897952
Alignment:
| Q |
11 |
taatactcaaccattaaagaagagaaaggctaatgcaaatggtcctaggcaaacagcggcttgctgggaacactttataaggttacctgatagtgaggtt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22898192 |
taatactcaaccattaaagaagagaaaggctaatgcaaatggtcctaggaaaacagcggcttgctgggaacactttataaggttacctgatagtgaggtt |
22898093 |
T |
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| Q |
111 |
gacaaaccaactgcttcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccaaaaacttgaacacacatatcactaaatgtc |
210 |
Q |
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| T |
22898092 |
gacaaaccaactgctgcttgtaaacattgtcaccaaagatacctgtgtgaccctaagactcatggtaccattaacttgaacacacatattactaaatgtc |
22897993 |
T |
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| Q |
211 |
ttatccttcaatgttttctaaaaaatggccccaaccaaacc |
251 |
Q |
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| T |
22897992 |
ttatccttcaatgttttttaaaaaatggccccaaccaaacc |
22897952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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